CF836118

Overview
NameCF836118
Unique NameCF836118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836118_ssr148 microsatellite CF836118_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:711..1433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  447 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 701
            DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y++  +A
Sbjct:  170 DPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFVGAGLAGLLYEYLVIPSA 247          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = -1
Query:  453 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 659
            AP+ +G A+   HLA I  TG+ +NPARSFG AV  N +  W + W++W GP +G  VA   ++ + RA
Sbjct:  177 APVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVGGVVAGITYRALFRA 243          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = -1
Query:  459 VYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 725
            VY  ++   DPKR     H+  +APL +GF +    LA  P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y+L
Sbjct:  165 VYAYYATVVDPKRG----HLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLL 247          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  435 DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKAL 701
            DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++  +   W   W++W+GPF+GA +A   ++Y++  +A  A+
Sbjct:  169 DPKRG----HVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWR---WRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAV 250          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = -1
Query:  447 VYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAA 725
            V  +F++TD +R            L IGF+V + HL  I  TG  +NPARS   AV+  K   +DD W+FW+GP +GA + +  + Y+L  +A
Sbjct:  142 VLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLLFPSA 227          
BLAST of CF836118 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = -1
Query:  483 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVA 662
            +A LPIG ++FM H+A    TGTG+NPARS GAAV       +   WI+W+GP +GAF+A
Sbjct:  204 MAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
The following BLAST results are available for this feature:
BLAST of CF836118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
TIP31_ORYSJ3.996e-1140.00Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
AQP_CICVR3.996e-1143.48Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
TIP32_MAIZE5.219e-1138.89Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP31_MAIZE5.219e-1139.33Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
AQP2_RAT5.219e-1137.63Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQY2_YEAST8.902e-1151.67Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836118 ID=CF836118; Name=CF836118; organism=Citrus sinensis; type=EST; length=725bp
TTTTTTTTTTTTTTAGCAACTAAAAAAGGGCATAGTTTTATTCACTATAG
TTGGGGATTAATTAACATTAACAACATAAATACACCACTTGAAATAAAGA
AAAAGGAAAGGATAAGAAAAATATAGAGAAATAGGATATATAAAAAACAC
CACCACCACTTATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCA
AAATCCACCCTTACACATAGATAAAGCATAGGCATAAAATGCATAATGTT
CAAATATCTACAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCC
CTCTAAAGAGCTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTT
GCACTCCTGATCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCA
TATTTAAAGCTTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCT
GCTGCCCTGAGAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAAT
GAATGGTCCAACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGT
TGTAGATCACAGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCG
GTGATGGGGATGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGG
GAGTGGTGCCAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGAT
CAGTGGCAGAGAAAACAGTGTAGAC
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