CF836119

Overview
NameCF836119
Unique NameCF836119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836119_ssr110 microsatellite CF836119_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:80..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 44/123 (35.77%), Postives = 61/123 (49.59%), Query Frame = 2
Query:  317 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELA---------DGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            G+G LG+A AFG  +F   Y    ISGGH NPAV+FGL++G++    +   Y+ AQ LGAI    F+    +   N    G+N LA          GY     L  E + TF+ +  +   TD
Sbjct:   40 GLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTD 162          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 53/160 (33.12%), Postives = 72/160 (45.00%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   +F RAV+AEF+A            + +  Q  P+          +L IA AFG  I  LV     +SG HINPAVT    +G  VS +RA+ Y+ AQ LGA+ G   +         R     N L +    G  +  E+  T  LV  +F +TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWP-QALPS----------VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAI-RGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  317 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYG---GGANELA-DGYNKGTGLGAEIIGTFVLVYTVFSAT 655
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +  ++     + Y VAQ LGAI      +V A  K  ++  G    G  EL+  GY+   GL  EII T   +  +  +T
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  317 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYG---GGANELA-DGYNKGTGLGAEIIGTFVLVYTVFSAT 655
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +  ++     + Y VAQ LGAI      +V A  K  ++  G    G  EL+  GY+   GL  EII T   +  +  +T
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 45/119 (37.82%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  317 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYG---GGANELA-DGYNKGTGLGAEIIGTFVLVYTVFSAT 655
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +  ++     + Y VAQ LGAI      +V A  K  ++  G    G  EL+  GY+   GL  EII T   +  +  +T
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGST 151          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  317 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYGGGANELAD----GYNKGTGLGAEIIGTFVLVYTVFSAT 655
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +  +V     + Y++AQ  GAI      +V A  K+ +      AN   +    GY+    L  E++ TF  +  +  +T
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGST 151          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 52/160 (32.50%), Postives = 70/160 (43.75%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   +F RAV+AEF+A            + + S               +L IA AFG  I  LV     +SG HINPAVT    +G  VS +RA  Y+ AQ LGA+ G   +         R     N L +    G  +  E+  T  LV  +F++TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTD 150          
The following BLAST results are available for this feature:
BLAST of CF836119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
AQPZ_SYNY31.503e-1135.77Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQP2_SHEEP1.503e-1133.13Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQPZ_BRUME2.564e-1137.82Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ_BRUAB2.564e-1137.82Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA22.564e-1137.82Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQPZ2_RHIME2.564e-1132.77Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
AQP2_MOUSE3.349e-1132.50Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836119 ID=CF836119; Name=CF836119; organism=Citrus sinensis; type=EST; length=660bp
CTGTAGCAAACCCATCAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATT
AACCAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCT
GAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCC
CCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTT
ACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTT
ACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAA
TACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTG
GTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGA
CATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTC
GCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCT
GTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTAT
GGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACT
GGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTG
CCACTGATCC
back to top