CF836119

Overview
NameCF836119
Unique NameCF836119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836119_ssr110 microsatellite CF836119_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:80..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.099e-17
Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = 2
Query:  176 EELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTG----LGAEIIGTFVLVYTVFS 649
            EE+   +  RA +AEFI+            I +   TD    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG+ LG  ++L+R +LY +AQ LG++  C F+ +F         GG    A G + G G    L  EI+ TF LVYTV++
Sbjct:   13 EEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPS--GLVAAALAHAFG--LFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAAC-FLLSFAT-------GGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYA 162          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  164 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y++AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.552e-16
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  164 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            ++ F+ +   +F++AV AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  164 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            ++ F+ +   +F++AV AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 56/166 (33.73%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  164 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            +A +AEFI+            I Y   T+    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  ++L+R ++Y++AQ LG+I     +     S    +G     L++G   G  L  EI+ TF LVYTV++
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATP----AGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYA 160          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  164 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            ++ F+ +   +F++AV AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ +++ Y+ AQCLGAI G G +  +  +  +  GG G   +    + G GL  E+I TF LV+T+F++ D
Sbjct:   23 MVAFKGVWTQTFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPL-------PVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCD 179          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++A++Y VAQ LG++  C  +K          GG   GA  L+ G      +  EI+ TF LVYTV++
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPS----GLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI-------ATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYA 161          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.314e-15
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG---GANELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            +A +AEFI+            + +   TD    T      G++  + A    +F+ V   A ISGGH+NPAVTFG F+G  +SL++AL+Y VAQ LG++  C  +K          GG   GA  L+ G      +  E++ TF LVYTV++
Sbjct:   21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATP----AGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKI-------ATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYA 161          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 56/153 (36.60%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTG-LGA---EIIGTFVLVYTVFS 649
            +A +AEFI+            + +   T+    T    G+    +A AFG  +F+ V   A ISGGH+NPAVTFG F+G  ++L+R +LY +AQ LG++  C  +K           GG    A G + G G L A   EI+ TF LVYTV++
Sbjct:   21 KAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPS--GLVAAAVAHAFG--LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYA 161          
The following BLAST results are available for this feature:
BLAST of CF836119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
TIP12_ARATH9.099e-1737.65Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
AQP4_MOUSE1.188e-1633.73Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_DIPME1.552e-1633.73Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_RAT2.027e-1633.73Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_HUMAN5.898e-1633.73Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
TIP1_MEDTR7.703e-1634.23Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP4_BOVIN7.703e-1633.13Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP12_ORYSJ1.314e-1534.87Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE1.314e-1534.87Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ARATH1.716e-1536.60Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836119 ID=CF836119; Name=CF836119; organism=Citrus sinensis; type=EST; length=660bp
CTGTAGCAAACCCATCAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATT
AACCAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCT
GAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCC
CCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTT
ACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTT
ACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAA
TACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTG
GTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGA
CATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTC
GCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCT
GTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTAT
GGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACT
GGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTG
CCACTGATCC
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