CF836119

Overview
NameCF836119
Unique NameCF836119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836119_ssr110 microsatellite CF836119_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:80..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 54/151 (35.76%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANEL--ADGYNKGTGLGAEIIGTFVLVYTVFS 649
            +A  AEFI+            + +   T     T      G++  A A    +F+ V   A ISGGH+NPAVTFG F+G  ++L R LLY VAQ LG+   C F+  F        GG A       G +    L  EI+ TF LVYTV++
Sbjct:   21 KAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTP----AGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVAC-FLLRFST------GGQATGTFGLTGVSVWEALVLEIVMTFGLVYTVYA 160          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 55/160 (34.38%), Postives = 75/160 (46.88%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ YMVAQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 50/152 (32.89%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  194 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            S  +A ++EFIA            + +   T            G++ IA A    +F+ V   A ISGGH+NPAVT GL +G  ++LI    Y +AQCLG+I  C  +  F     N      + ++ G     G+  EI+ TF LVYTV++
Sbjct:   16 SSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGA----LDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVAC-LLLVF---VTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYA 159          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 54/160 (33.75%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  335 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            IA+ FG ++  L      +SG HINPAVT GL +   VS+++   Y+V+QC+GAI G   +KA   S     GG G   +A G + G G+  E + TF+LV+ V    D
Sbjct:   57 IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPS--EVVGGLGVTGIAPGLSTGQGVLIEALITFMLVFVVHGVCD 163          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 54/152 (35.53%), Postives = 73/152 (48.03%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC---GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            +A +AEFIA            I +   T    N       G++ IA A    +F+ V   A  SGGH+NPAVTFGL +G  ++++  L Y VAQ LGA   C    FV   +    +   GG  EL        G+  EI+ TF LVYTV++
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAFGQLT----NGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTEL-------EGVVFEIVITFALVYTVYA 159          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 54/160 (33.75%), Postives = 75/160 (46.88%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA+ Y+VAQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 50/150 (33.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGY-KSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            +A ++EFIA            + + K  +D  L+       G++ +A A    +F+ V   A ISGGH+NPAVT GL +G  +++I    Y +AQCLG+I  C  +  F     N      + +A G     G+  EI+ TF LVYTV++
Sbjct:   19 KAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDP-----AGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVAC-LLLVF---VTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYA 159          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 50/160 (31.25%), Postives = 71/160 (44.38%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            E   +SF+RAV AEF              + + +           G   +L IA AFG ++  +V     +SG HINPAVTF   +G ++SL RA+ Y+ AQ LGA+ G   +     +   R     N L  G + G     EI  T   V  +F+  D
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFGLGASLKWAA-----------GPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAI-RGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.776e-12
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 2
Query:  194 SFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            + +R ++AEF+             +G+     P +            IA+ FG ++  L      +SG HINPAVT GL +   +S+++   Y+V+QC+GAI G   +KA   S  +  GG G   +      G G+  E + TF+LV+ V    D
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPTMTQ----------IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPS--DVIGGLGVTGIDPRLTAGQGVMIEALITFILVFVVHGVCD 164          
The following BLAST results are available for this feature:
BLAST of CF836119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
TIP11_MAIZE2.740e-1335.76Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
MIP_BOVIN2.740e-1334.38Lens fiber major intrinsic protein OS=Bos taurus G... [more]
TIP23_ARATH4.673e-1332.89Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
MIP_CANFA4.673e-1333.75Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP_ANOGA4.673e-1339.45Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
TIP22_MAIZE6.103e-1335.53Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
MIP_SHEEP6.103e-1333.75Lens fiber major intrinsic protein OS=Ovis aries G... [more]
TIP22_ARATH1.360e-1233.33Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
MIP_RANPI1.776e-1231.25Lens fiber major intrinsic protein OS=Rana pipiens... [more]
AQP_AEDAE1.776e-1229.49Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836119 ID=CF836119; Name=CF836119; organism=Citrus sinensis; type=EST; length=660bp
CTGTAGCAAACCCATCAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATT
AACCAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCT
GAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCC
CCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTT
ACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTT
ACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAA
TACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTG
GTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGA
CATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTC
GCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCT
GTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTAT
GGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACT
GGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTG
CCACTGATCC
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