CF836119

Overview
NameCF836119
Unique NameCF836119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836119_ssr110 microsatellite CF836119_ssr110:110..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2013 contig Csv1_Contig2013:80..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.319e-12
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  296 LNTDQCGGVGI------LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            + T  C GV I      + IA  FG +I  +V C   +SG HINPAVT GL +   +S+++A+ Y++ QC+GAI G   +K    + + R       LA G     G   E   TFVL+  V S  D
Sbjct:   42 IGTGSCTGVQISEGDVVVRIALTFGFIIATMVQCIGHVSGCHINPAVTCGLLVTGHISILKAIFYIIVQCVGAIAGSAILKVITPAEF-RGTLCMTSLAPGVTPPMGFLVEACITFVLILLVQSVCD 167          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 53/160 (33.12%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  Y+ AQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAP-------GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYD 148          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 53/160 (33.12%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  Y+ AQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 53/160 (33.12%), Postives = 72/160 (45.00%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G   + +       R     N L    + G     EI  T   V  +F+  D
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAP-------GPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 54/160 (33.75%), Postives = 76/160 (47.50%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA++AEF+             +G   +  P       G  G+LG A AFG     LV     +SGGHINPA+T    L  ++SL RAL Y++AQ LGA+ G G +     +   R   G + L      G G   E++ T   +  VF++ D
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAP-------GPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAV-RGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.956e-12
Identity = 49/153 (32.03%), Postives = 70/153 (45.75%), Query Frame = 2
Query:  203 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGAN----ELADGYNKGTGLGAEIIGTFVLVYTVFS 649
            RA I+EFIA            +        +      GG+  + +A A G  + + V     +SGGH+NPAVTFG  +G +VSL+RA+LY  AQ LGA+     ++           GGA      LA G   G  +  E + TF  VY  ++
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALG--LAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLAT--------GGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYA 170          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 53/160 (33.12%), Postives = 72/160 (45.00%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  YM AQ LGA+ G   + +       R     N L  G +       EI  T   V  +F+  D
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 53/160 (33.12%), Postives = 71/160 (44.38%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   +F RAV+AEF+A            + + S               +L IA AFG  I ILV     +SG HINPAVT    +G  VS +RA  Y+ AQ LGA+ G   +         R     N L +    G  +  E+  T  LV  +F++TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPP-----------SVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEI-RGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 54/160 (33.75%), Postives = 74/160 (46.25%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   +F RAV AEF+A            + +  Q  P+          +L IA AFG  I  LV     ISG HINPAVT    +G  VS++RA  Y+ AQ LGA+ G   +     +   R     N L++    G  +  E+  T  LV  +F++TD
Sbjct:    3 ELRSIAFSRAVFAEFLATLLFVFFGLGSALNWP-QALPS----------VLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADI-RGDLAVNALSNSTTAGQAVTVELFLTLQLVLCIFASTD 150          
BLAST of CF836119 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 53/160 (33.12%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  179 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATD 658
            EL   +F RAV+AEF+A            + +  Q  P+          +L IA AFG  I  LV     +SG HINPAVT    +G  VS +RA+ Y+ AQ LGA+ G   +         R     N L +    G  +  E+  T  LV  +F++TD
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWP-QALPS----------VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAI-RGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTD 150          
The following BLAST results are available for this feature:
BLAST of CF836119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
AQP_CICVR2.319e-1236.22Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
MIP_RAT3.029e-1233.13Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE3.029e-1233.13Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_HUMAN3.029e-1233.13Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CHICK3.029e-1233.75Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP32_MAIZE3.956e-1232.03Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
MIP_CAVPO8.813e-1233.13Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQP2_RAT8.813e-1233.13Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQP2_HUMAN8.813e-1233.75Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]
AQP2_BOVIN8.813e-1233.13Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836119 ID=CF836119; Name=CF836119; organism=Citrus sinensis; type=EST; length=660bp
CTGTAGCAAACCCATCAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATT
AACCAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCT
GAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCC
CCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTT
ACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTT
ACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAA
TACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTG
GTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGA
CATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTC
GCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCT
GTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTAT
GGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAGGGCACCGGACT
GGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTG
CCACTGATCC
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