CF836125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21 Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = -3 Query: 206 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 667 D+ +L+ IC+R+K ++T+ + +EGDPV MLF++RG L+S + + + +L G+F G+ELL+W L EAF L A+++K+V FR ++ V+ + R+YS WRTWAA+ IQ AWRRY + L L Sbjct: 518 DERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQL 672
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21 Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = -3 Query: 233 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCM----LGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 667 D+ +L+ +CDR++ +++T+ I +EGDPV MLF++RG L + I N ++ + LG G+F G+ELL+W L EAF L+A+D+K+V FR K+ ++ + RYYS W+TWAA IQ AWRRY Sbjct: 491 DEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT--ITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQ-LRHTFRYYSQQWKTWAACFIQAAWRRY 636
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20 Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = -3 Query: 224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667 DD +L+ IC R+K +FT+ + +EGDPV MLF++RG L+S + + + +L G F G+ELL+W L EAF L +E++K+V FR ++ V+ + R+YS WRTWAA IQ AWRRY R Sbjct: 503 DDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFRRLHSRQ-VQHTFRFYSHQWRTWAACFIQAAWRRYCKR 651
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.301e-20 Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = -3 Query: 203 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 667 D+ +L+ +CD++K +++T+ +EGDPV+ MLFV+RG L S+ + L P +F G++LL+W L EAF L A+D+K V FR K+ ++ + R+YS WRTW A IQ AWRR+ R SL+ Sbjct: 479 DEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQ-LQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLT 634
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19 Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = -3 Query: 206 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 667 D+ +L+ +CDR++ +++T+ + +EGDPV MLFV+RG L S+ + + L +F G++LL W L EAF L AED+K V FR K+ ++ + R+YS WRTW+ IQ AWRRY R SL Sbjct: 478 DEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQ-LQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAKSL 632
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17 Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = -3 Query: 212 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY-KHRLTLT 667 D +LE +CDRVKS+ + I +EG PV+ ML V RG L+S+ H +CC L G+ G+ L + R E F L +D+K++ H F ++K++R+ R YS WR+WAA IQ AWR++ K +L+ T Sbjct: 441 DGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLN-VFQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKRKLSKT 587
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16 Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = -3 Query: 224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667 DD +L+ +C R+K++++T+ I +EG+PV+ MLF++RG+L S+ + L G+F GD LL+W L P + E F L A+D+K+V +R K+ ++ R+YS W+TWAA IQ AW+R+ R Sbjct: 482 DDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYRRLHSKQ-LRHMFRFYSVQWQTWAACFIQAAWKRHCRR 628
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13 Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = -3 Query: 224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667 DD +L+ +C R+K++ +T+ I +EG+PV+ MLF++RG+L S+ + L G+ GD LL+W L + E F + A+D+K+V +R K+ ++ R+YS W+TWAA IQ AW+R+ R Sbjct: 440 DDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRTVQALTEVEGFVISADDLKFVATQYRRLHSKQ-LQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12 Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = -3 Query: 221 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCL--------RRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 667 D+ VL++I +R+K + + + V++M+F+VRG ++S S L G+ G+ELL+WCL R + EAF L D++ VT F +V+ + RY SP WR AA+ IQ+AWR K +L Sbjct: 565 DESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESI----GEDGSVLPLSEGDVCGEELLTWCLSSINPDGTRIKMPPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQL 717
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11 Identity = 48/159 (30.19%), Postives = 73/159 (45.91%), Query Frame = -3 Query: 221 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIE----------RXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 667 D+ +L+ I +R+K + + G V++M+F+VRG ++S S L G+ G+ELL+WCL R + + EAF L D++ VT F +V+ + RY SP WR AA IQ+AWR + RL Sbjct: 598 DEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESI----GEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRL 752 The following BLAST results are available for this feature:
BLAST of CF836125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836125 ID=CF836125; Name=CF836125; organism=Citrus sinensis; type=EST; length=669bpback to top |