CF836125

Overview
NameCF836125
Unique NameCF836125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = -3
Query:  206 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 667
            D+ +L+ IC+R+K  ++T+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G+F G+ELL+W L                     EAF L A+++K+V   FR    ++ V+ + R+YS  WRTWAA+ IQ AWRRY  +  L  L
Sbjct:  518 DERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFVASQFRRLHSRQ-VQHTFRFYSQQWRTWAAIFIQAAWRRYVKKKKLEQL 672          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = -3
Query:  233 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCM----LGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY 667
            D+ +L+ +CDR++ +++T+   I +EGDPV  MLF++RG L +  I  N  ++  +    LG G+F G+ELL+W L                     EAF L+A+D+K+V   FR    K+ ++ + RYYS  W+TWAA  IQ AWRRY
Sbjct:  491 DEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLT--ITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQ-LRHTFRYYSQQWKTWAACFIQAAWRRY 636          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 57/150 (38.00%), Postives = 82/150 (54.67%), Query Frame = -3
Query:  224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667
            DD +L+ IC R+K  +FT+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G F G+ELL+W L                     EAF L +E++K+V   FR    ++ V+ + R+YS  WRTWAA  IQ AWRRY  R
Sbjct:  503 DDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFRRLHSRQ-VQHTFRFYSHQWRTWAACFIQAAWRRYCKR 651          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.301e-20
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = -3
Query:  203 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 667
            D+ +L+ +CD++K +++T+     +EGDPV+ MLFV+RG L S+          +   L P +F G++LL+W L                     EAF L A+D+K V   FR    K+ ++ + R+YS  WRTW A  IQ AWRR+  R    SL+
Sbjct:  479 DEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQ-LQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLT 634          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = -3
Query:  206 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 667
            D+ +L+ +CDR++ +++T+   + +EGDPV  MLFV+RG L S+      +   +   L   +F G++LL W L                     EAF L AED+K V   FR    K+ ++ + R+YS  WRTW+   IQ AWRRY  R    SL
Sbjct:  478 DEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQ-LQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAKSL 632          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  212 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY-KHRLTLT 667
            D  +LE +CDRVKS+ +     I +EG PV+ ML V RG L+S+   H      +CC L  G+  G+ L +         R              E F L  +D+K++  H    F ++K++R+ R YS  WR+WAA  IQ AWR++ K +L+ T
Sbjct:  441 DGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLN-VFQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKRKLSKT 587          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.084e-16
Identity = 52/150 (34.67%), Postives = 83/150 (55.33%), Query Frame = -3
Query:  224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667
            DD +L+ +C R+K++++T+   I +EG+PV+ MLF++RG+L S+          +   L  G+F GD LL+W L  P   +              E F L A+D+K+V   +R    K+ ++   R+YS  W+TWAA  IQ AW+R+  R
Sbjct:  482 DDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYRRLHSKQ-LRHMFRFYSVQWQTWAACFIQAAWKRHCRR 628          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.652e-13
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = -3
Query:  224 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 667
            DD +L+ +C R+K++ +T+   I +EG+PV+ MLF++RG+L S+          +   L  G+  GD LL+W L      +              E F + A+D+K+V   +R    K+ ++   R+YS  W+TWAA  IQ AW+R+  R
Sbjct:  440 DDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRTVQALTEVEGFVISADDLKFVATQYRRLHSKQ-LQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = -3
Query:  221 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCL--------RRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 667
            D+ VL++I +R+K   + +   +      V++M+F+VRG ++S         S   L  G+  G+ELL+WCL        R     +              EAF L   D++ VT  F       +V+ + RY SP WR  AA+ IQ+AWR  K +L
Sbjct:  565 DESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESI----GEDGSVLPLSEGDVCGEELLTWCLSSINPDGTRIKMPPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQL 717          
BLAST of CF836125 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 48/159 (30.19%), Postives = 73/159 (45.91%), Query Frame = -3
Query:  221 DDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIE----------RXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 667
            D+ +L+ I +R+K   +     +   G  V++M+F+VRG ++S         S   L  G+  G+ELL+WCL R  +           +              EAF L   D++ VT  F       +V+ + RY SP WR  AA  IQ+AWR  + RL
Sbjct:  598 DEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESI----GEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRL 752          
The following BLAST results are available for this feature:
BLAST of CF836125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC9_ARATH2.811e-2135.90Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC1_ARATH2.811e-2138.26Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC5_ARATH1.822e-2038.00Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG13_ARATH5.301e-2035.03Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG10_ARATH4.487e-1935.26Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG12_ARATH7.164e-1734.84Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNGC3_ARATH2.084e-1634.67Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG11_ARATH1.652e-1332.67Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG19_ARATH9.063e-1230.57Putative cyclic nucleotide-gated ion channel 19 OS... [more]
CNG20_ARATH1.546e-1130.19Probable cyclic nucleotide-gated ion channel 20, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836125 ID=CF836125; Name=CF836125; organism=Citrus sinensis; type=EST; length=669bp
GTTTTTTTACCCTTAAAGGGGNAACTCTTCCTCCGAATAAAATATGTTCC
CCTTTAAAGGTCTTCCATACGTCCTCCAACAAATTTCAGAAATCAAAATC
ATCTTGGTTAGGTTTCGGAGAAGTTAACAAAGCCGTATAAAGCCTGAGCC
TGTCCTCCCCCAACGACGAACACCGGGACAAAGGCCTTCTCGGACGTATA
AACGACAGCGAAGTGAGTGTCAACCGGTGCTTGTACCTTCTCCAAGCAAG
CTGAATAGCCACAGCTGCCCAAGTTCTCCATCCTGGAGAATAGTACCTGG
CACTTCTCTTCACTTTCTCCTTAACAAACGTGTACCTGAAATGTTGTGTC
ACATATTTCACATCTTCGGCTTCCAGGCCAAATGCCTCTGTTGTTTCCAG
GGTTATTAAAGTAGATGAAGATGGCGGTAGCCTTTCGATGAAGGGTCTCC
GAAGGCACCAGGATAGAAGCTCATCGCCACTGAAGTTTCCAGGGCCCAAC
ATGCAGCAACTTTTGATGTTGTTGTGGAGAATTTGGCTGCTTTGAAGATG
CCCTCTTACTACAAATAGCATTCTTTGTACTGGGTCACCCTCTTTTGTTA
TCACTTCACCCTTTGTAAATATGAGAGACTTCACTCGATCACAAATATTC
TCCAAAACCAAATCATCCA
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