CF836130

Overview
NameCF836130
Unique NameCF836130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7705 contig Csv1_Contig7705:37..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.932e-18
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = -3
Query:  247 KAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVP--TYEDKDGDWMLVGDVPWKMFVESCKRVRLM 582
            K  VVGWPPV + R+    G   +VKV  EG    RKVDL ++ SY EL + L  MF      +H  E+K+ ++ +G    P  TYED DGDWMLVGDVPW  F  S KR++++
Sbjct:   73 KKTVVGWPPVSSARRAC--GGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFP---TNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA2_ORYSJ (Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 63/187 (33.69%), Postives = 90/187 (48.13%), Query Frame = -3
Query:  235 WSSSNDNKHCEENDA-----MASTTTPATK-------AQVVGWPPVRAYRKNAMKGSCK-----------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRN------HVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 654
            +SSS+ +K  E + A     + S  T A+K       A VVGWPPVR++R+N    S                               FVK+ ++G P  RKVDL  Y  Y +L +A++ +F  L            +     + V G EY   YED +GD MLVGDVPW+MF+ + KR+R++KSS+
Sbjct:   32 FSSSSSSKPSEGSTAAPAFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSD 218          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 62/170 (36.47%), Postives = 84/170 (49.41%), Query Frame = -3
Query:  235 ASTTTPATK----AQVVGWPPVRAYRKNAMKGSCK----------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH-----VNERKIIDNV---NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 606
            +ST T + K      VVGWPPVR++RKN   GS                                    FVK+ + G P  RKVDL  ++SY++L   ++ +F  L          + + K I  +   NG EY  TYED +GD MLVGDVPW+MFV S KR+R++K+SE
Sbjct:   82 SSTKTTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRDFPSSIEDEKPITGLLDGNG-EYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA6_ORYSJ (Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 56/150 (37.33%), Postives = 79/150 (52.67%), Query Frame = -3
Query:  235 AQVVGWPPVRAYRKNAMKGS--------------------CK---FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLTIRNHVNERKIIDN----------VNGV-EYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 579
            A VVGWPP+R++R+N    S                    CK    VK+ ++G P  RK+DL  Y+SY  L SA++ +F  FL  +      +I             ++G  EY   YED +GD MLVGDVPWK+FV + KR+R+++SSE
Sbjct:  174 APVVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTCKKNPLVKINMDGIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSE 323          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.136e-17
Identity = 63/182 (34.62%), Postives = 86/182 (47.25%), Query Frame = -3
Query:  202 DNKHCEEND-AMASTTTPATKAQVVGWPPVRAYRKNAM--------------------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGLAPRTPAK 639
            +  H   N+ A+      A+ AQ+VGWPPVRA+RKN                                    S  FVKV +EG    RK+DL+ + SY  L  AL+ MF  FL+  I    NE + ++  +   YV  YED +GD MLVGDVPW++F+ S KR+ + +        PR  AK
Sbjct:   70 EQAHQRPNECAVQRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYIAQD-------PRVHAK 244          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 50/132 (37.88%), Postives = 75/132 (56.82%), Query Frame = -3
Query:  244 STTTPATKAQVVG---WPPVRAYRKNAMKG---------SCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 603
            S T P+T  Q      WPP+++  ++ +KG         +  FVKV +EG P  RK+DL ++  Y+ LL  L  MF    I  +  +RK         +V TYEDKDGDWM+VGD+PW MF+E+ +R+++ +
Sbjct:   32 SLTFPSTSPQREARQDWPPIKSRLRDTLKGRRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGN-RDRK--------HHVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 55/172 (31.98%), Postives = 84/172 (48.84%), Query Frame = -3
Query:  235 SSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGS--------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTI--------------RNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 648
            ++ +N     N+    T +P+T   VVGWPPVR +R+N    S                      F+K+ ++G P  RK+DL  + SY++L  A++ +F  L                +  V    ++D     EY   YED +GD +LVGDVPW MFV S KR+R++K+S+
Sbjct:  116 ATGNNALASNNNGCFQTRSPSTP--VVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTG--EYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 64/203 (31.53%), Postives = 91/203 (44.83%), Query Frame = -3
Query:  223 TSWSSSNDNKHCEENDAMASTTTPA-----TKAQVVGWPPVRAYRKNAMKGSCK---------------------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-------------SFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL 660
            +S SSS+ +   E     ++ ++PA     T+   VGWPP+R YR N++    K                                        VKV ++G    RKVDL    SY  L   L+ MF              + TI+      K++D  +  EY+ TY+DKDGDWMLVGDVPW+MF+ S  R+R+MK+S   G+
Sbjct:   60 SSLSSSSSSLTRESGTKRSADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMFFQIPSPVTRSNTQGYKTIKETCTS-KLLDGSS--EYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA20_ORYSJ (Auxin-responsive protein IAA20 OS=Oryza sativa subsp. japonica GN=IAA20 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 50/134 (37.31%), Postives = 69/134 (51.49%), Query Frame = -3
Query:  247 NDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK--FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLM 642
            ND+ +    D  +       + ++VGWPPV+   +    G C   +VKV +EG    RK+DL I  SY ELL  L  MF         N+    D      Y  TYED +GDWM VGDVPW+ F +S KR++++
Sbjct:   56 NDDGNGRGGDGDSDGEMGNKRRKLVGWPPVKCLHRRR-DGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFP------STNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWEAFAKSVKRLKIL 182          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = -3
Query:  235 AQVVGWPPVRAYRKNAMKGS---------------------CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNH-----------------VNERK----IIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 579
            A VVGWPPVR++R+N    S                      +FVKV ++G P  RKVDL  +  Y EL +A++ +F  L                        E +    ++D  +G EY   YED +GD MLVGDVPW MF+ + +R+R+++SS+
Sbjct:   56 APVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSG-EYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
The following BLAST results are available for this feature:
BLAST of CF836130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA9_ORYSJ1.932e-1845.61Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]
IAA2_ORYSJ3.295e-1833.69Auxin-responsive protein IAA2 OS=Oryza sativa subs... [more]
IAA18_ARATH5.621e-1836.47Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA6_ORYSJ1.252e-1737.33Auxin-responsive protein IAA6 OS=Oryza sativa subs... [more]
IAA25_ORYSJ2.136e-1734.62Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA31_ARATH3.643e-1737.88Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]
IAA7_ORYSJ6.214e-1731.98Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA10_ARATH8.116e-1731.53Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA20_ORYSJ8.973e-1637.31Auxin-responsive protein IAA20 OS=Oryza sativa sub... [more]
IAA16_ORYSJ1.172e-1533.76Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836130 ID=CF836130; Name=CF836130; organism=Citrus sinensis; type=EST; length=716bp
GGGAGCAGGGCTCTCTTATTTCTCTAACCTTAAATGATCAAAATCTGATC
GTCAAAACTCTCCTAAGAAAACACAGTGGTGTGTACTAAAATTCAAATCA
ATCCAAAGCCTCTGTACAGCCATTAATTGTCACTCCAGGAATGCCTCCTT
ATACAATAAGGCCCTTATTCTGTTATTCATTCTTCAACTCTTGCTTGAAT
TTTTTGCAGGTGTTCTTGGAGCTAACCCAATTGCTTCTGAGCTTTTCATC
AACCTTACTCGCTTGCAAGATTCAACAAACATTTTCCATGGCACATCTCC
AACTAACATCCAATCTCCATCTTTGTCTTCATAAGTAGGTACATATTCAA
CTCCATTTACATTATCTATAATCTTTCTCTCATTTACGTGGTTCCTTATA
GTCAAGAATGAGAACATATCCTCTAAAGCACTCAAGAGTTCTTGATAACT
ATGGTATATCTCAAGGTCAACTTTTCTTAGATATGGAGCTCCTTCAACTG
CCACCTTTACAAATTTGCAGCTGCCCTTCATAGCATTTTTCCGATATGCT
CTCACCGGCGGCCACCCCACCACTTGTGCCTTGGTTGCTGGGGTTGTAGT
CGAGGCCATTGCATCGTTCTCTTCGCAATGTTTGTTATCGTTGCTTGAGC
TCCATGAGGTTTAGATCAACGGTCTCTAAGAAGCCACGCTTCCTGCCGGC
TTTCGTCCGGTGACAC
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