CF836130

Overview
NameCF836130
Unique NameCF836130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  244 SWSSSNDNKHCEENDAMASTTTPAT--KAQV-VGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 657
            S SSS+         A A  + P+T   +QV   WPP++ + ++A++ +              FVKV +EG P  RK+DL +   Y  LL  L  MF   T   + +  +    V G +  +V TYED+DGDWM+VGDVPW++F+ S K++R+ +
Sbjct:   47 STSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  244 SWSSSNDNKHCEENDAMASTTTPAT--KAQV-VGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 657
            S SSS+         A A  + P+T   +QV   WPP++ + ++A++ +              FVKV +EG P  RK+DL +   Y  LL  L  MF   T   + +  +    V G +  +V TYED+DGDWM+VGDVPW++F+ S K++R+ +
Sbjct:   47 STSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 56/158 (35.44%), Postives = 73/158 (46.20%), Query Frame = -3
Query:  286 WSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNA--------------MK------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 654
            W+ S +N+              A+ AQ+VGWPPVR +RKN               MK                   S  FVKV +EG    RK+DL+ + SY  L  AL+ MF  FL+  I    NE + ++  +   YV  YED +GD MLVGDVPW
Sbjct:   27 WNESGENR-------------AASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPW 171          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = -3
Query:  235 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNV--NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 513
            FVKV +EG P  RK+DL     Y+ L++ L  MF      +H + +  +  +  N V +V TYED++GDWM+ GDVPW++F+ S KR+R+ ++ +
Sbjct:  105 FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = -3
Query:  238 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSS 513
            +VKV +EG P  RK+DL   + Y++L+  L+ MF+   +          D  N   +V TY DK+GDWM+VGDVPW+MF+ + +R+++ +++
Sbjct:   86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEE-----DMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of CF836130 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  241 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKS 513
            +VKV +EG P  RK+DL   + Y +L++ L+ MF+   +          D  +   +V TY DK+GDWM+VGDVPW+MF+ S +R+++ ++
Sbjct:   84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEE-----DMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169          
The following BLAST results are available for this feature:
BLAST of CF836130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA4_ORYSJ5.816e-1534.84Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI5.816e-1534.84Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA22_ORYSJ6.431e-1435.44Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA8_ORYSJ8.399e-1440.00Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA20_ARATH1.213e-1238.04Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA30_ARATH2.702e-1238.46Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836130 ID=CF836130; Name=CF836130; organism=Citrus sinensis; type=EST; length=716bp
GGGAGCAGGGCTCTCTTATTTCTCTAACCTTAAATGATCAAAATCTGATC
GTCAAAACTCTCCTAAGAAAACACAGTGGTGTGTACTAAAATTCAAATCA
ATCCAAAGCCTCTGTACAGCCATTAATTGTCACTCCAGGAATGCCTCCTT
ATACAATAAGGCCCTTATTCTGTTATTCATTCTTCAACTCTTGCTTGAAT
TTTTTGCAGGTGTTCTTGGAGCTAACCCAATTGCTTCTGAGCTTTTCATC
AACCTTACTCGCTTGCAAGATTCAACAAACATTTTCCATGGCACATCTCC
AACTAACATCCAATCTCCATCTTTGTCTTCATAAGTAGGTACATATTCAA
CTCCATTTACATTATCTATAATCTTTCTCTCATTTACGTGGTTCCTTATA
GTCAAGAATGAGAACATATCCTCTAAAGCACTCAAGAGTTCTTGATAACT
ATGGTATATCTCAAGGTCAACTTTTCTTAGATATGGAGCTCCTTCAACTG
CCACCTTTACAAATTTGCAGCTGCCCTTCATAGCATTTTTCCGATATGCT
CTCACCGGCGGCCACCCCACCACTTGTGCCTTGGTTGCTGGGGTTGTAGT
CGAGGCCATTGCATCGTTCTCTTCGCAATGTTTGTTATCGTTGCTTGAGC
TCCATGAGGTTTAGATCAACGGTCTCTAAGAAGCCACGCTTCCTGCCGGC
TTTCGTCCGGTGACAC
back to top