CF836131

Overview
NameCF836131
Unique NameCF836131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836131_ssr118 microsatellite CF836131_ssr118:118..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7347 contig Csv1_Contig7347:17..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 81/177 (45.76%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  158 KRGFLETVDLNLMSSSNDNKHCEEN------DAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK----------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEA--IGLAPR 634
            KR F E   +N+ SS +++  CE        DA     +PA K+QVVGWPPV +YRK   K SCK          +VKV+++G PYLRK+DL     Y +L  AL+ +F F  I   + +       +  EYV  YEDKDGDWML GDVPW MF+ESCKR+R+MK S+A   GL PR
Sbjct:   29 KRAFTE---MNMTSSGSNSDQCESGVVSSGGDAEKVNDSPAAKSQVVGWPPVCSYRK---KNSCKEASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVALKDG------DNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPR 193          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.560e-31
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 2
Query:  224 EENDAMASTTTPATKAQVVGWPPVRAYRKNAM-KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIG 622
            EEN       +   K QVVGWPPV +YRK  M +GS  ++KV+++GAPYLRK+DL ++  Y EL  ALE +F    I       + + +    E+VP YEDKDGDWMLVGDVPW+MF+ESCKR+R+MK S+A G
Sbjct:   39 EENGGSGDRKSVDKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLCLHKGYLELALALEKLFDCCGIE------EALKDAENCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 69/137 (50.36%), Postives = 97/137 (70.80%), Query Frame = 2
Query:  266 KAQVVGWPPVRAYRK-NAM-KGSCK-FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEA--IGLAPRTPAKNSSKS 661
            K+QVVGWPPV +YRK N+M +G+ K +VKV+++GAP+LRK+DL ++  Y +L  AL+ +F    +       + + N +  E+VP YEDKDGDWMLVGDVPW+MF+ESCKR+R+MK S+A   GL P+   K   +S
Sbjct:   62 KSQVVGWPPVCSYRKKNSMNEGASKMYVKVSMDGAPFLRKIDLGLHKGYSDLALALDKLFGCYGMV------EALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPKGSLKGFIES 192          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.550e-29
Identity = 67/136 (49.26%), Postives = 92/136 (67.65%), Query Frame = 2
Query:  266 KAQVVGWPPVRAYRK--NAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEA--IGLAPRTPAKNSSKS 661
            K QVVGWPPV +YRK  +  + S  +VKV+++GAP+LRK+DL ++  Y +L  ALE +F    +       + + NV   E+VP YEDKDGDWMLVGDVPW+MF+ESCKR+R+MK ++A   GL P+   K   +S
Sbjct:   62 KNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMV------EALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPKGSLKGFIES 191          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.248e-29
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 2
Query:  227 ENDAMASTTTPATKAQVVGWPPVRAYRK-NAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIG 622
            EN +        TK QVVGWPPV +YRK N +     +VKV+++GAP+LRK+DL ++  Y +L  AL+  F    I       + + +    E+VP YEDKDGDWMLVGDVPW+MF ESCKR+R+MK S+A G
Sbjct:   44 ENSSSEEDGKKETKNQVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGIC------EALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 65/120 (54.17%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  257 PATKAQVVGWPPVRAYR-KNAMKGS-CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSS 610
            PA K+QVVGWPPV +YR KN+++ +   +VKV+V+GA +LRK+DLE+Y  YQ+L SAL+ +F       ++N     D +   E VP YEDKDGDWML GDVPW+MF+ SCKR+R+MK S
Sbjct:   48 PAKKSQVVGWPPVCSYRRKNSLERTKSSYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFGC-----YIN---FDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRS 159          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA31_ORYSJ (Auxin-responsive protein IAA31 OS=Oryza sativa subsp. japonica GN=IAA31 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 69/160 (43.12%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  227 ENDAMASTTTPATKAQVVGWPPVRAYRKNAMKGSCK---------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL 625
            E D        A KAQVVGWPPVR+YRK+ ++ +                             FVKV+++GAPYLRK+DL++Y  Y+EL  ALE MF   +     +       VN  ++  TYEDKDGD MLVGDVP++MF+ +CKR+R+MK SEA GL
Sbjct:   38 EPDQAKIKPAAAAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAA-----VNPSDFAVTYEDKDGDLMLVGDVPFEMFISTCKRLRIMKGSEARGL 192          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.578e-26
Identity = 74/177 (41.81%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  152 GTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAM----------------------KGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEA 616
            G KR  LE+ D ++ S +  +   +E+D    T  PA KAQVVGWPPVRAYR+N                        +G   +VKV+++GAPYLRKVDL++   Y+EL  AL+ +F+              D  +  ++   YEDKDGD MLVGDVPW+MF+ SCK++R+MK SEA
Sbjct:   53 GAKRS-LESTD-SMASGTGTSAAGDEHDD--DTAAPA-KAQVVGWPPVRAYRRNTFHQAAAAAAATKKGGDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLKMCKGYRELREALDLLFT------KCFSATASDGCSDGQFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.367e-26
Identity = 68/151 (45.03%), Postives = 96/151 (63.58%), Query Frame = 2
Query:  191 LMSSSNDNKHCEENDAMAST---TTPATKAQVVGWPPVRAYR--KNAMKGS--CKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIG 622
            + SS+ D ++  EN  ++S    + P  K+Q VGWPPV +YR  KN  + S    +VKV+++G PY+RK+DL   +SY  L++ LE++F  L I      +K        EY+  YEDKD DWMLVGDVPW+MF ESCKR+R++K S+A G
Sbjct:   42 MTSSALDTEN--ENSVVSSVEDESLPVVKSQAVGWPPVCSYRRKKNNEEASKAIGYVKVSMDGVPYMRKIDLGSSNSYINLVTVLENLFGCLGIGVAKEGKKC-------EYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.501e-26
Identity = 79/204 (38.73%), Postives = 105/204 (51.47%), Query Frame = 2
Query:  143 TKAGTKRGFLETVDLNLMSSSNDNKHCEENDAMASTTTPATKAQVVGWPPVRAYRKNAMK-------------GSCK--------------------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSEAIGL-APR 634
            T  G KR      D N  +++ D+   +E+DA+ +   P  KAQVVGWPPVR+YRK+  +              SC                            VKV+++GAPYLRK+DL +Y  Y+EL  ALE MF   +           D  N  E+  TY+DKDGD MLVGDVP+ MF  +CK++R+MK SEA GL +PR
Sbjct:   32 TPRGKKRA-AAAEDNNANAAAADD---DEHDAVEAAP-PVAKAQVVGWPPVRSYRKSCFQQQSAAASKSKAAVSSCNNKDEPITKNAAPAPAASSAAAANGGSLVKVSMDGAPYLRKIDLRMYKGYRELREALEAMFVCFS--------GAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPR 222          
The following BLAST results are available for this feature:
BLAST of CF836131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA19_ARATH5.363e-3245.76Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
IAA6_PEA1.560e-3151.49Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
AUX22_SOYBN1.118e-2950.36Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
AX22A_PHAAU5.550e-2949.26Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
AX22C_PHAAU7.248e-2948.87Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
IAA5_ARATH2.754e-2854.17Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]
IAA31_ORYSJ6.784e-2743.13Auxin-responsive protein IAA31 OS=Oryza sativa sub... [more]
IAA24_ORYSJ2.578e-2641.81Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA6_ARATH3.367e-2645.03Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA12_ORYSJ7.501e-2638.73Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836131 ID=CF836131; Name=CF836131; organism=Citrus sinensis; type=EST; length=726bp
TTTTGTTAACCCATATAACCACATAGCAAAGCAAAATTTGGCAACCTTAG
ACCTAATGACACCGGAAAAAGTTAATCATTTGCCGGAATCCGACACGAAG
CTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACGAAAGC
CGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCATGAGCT
CAAGCAACGATAACAAACATTGCGAAGAGAACGATGCAATGGCCTCGACT
ACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGAGC
ATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGTGGCAG
TTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACCATAGT
TATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTGACTAT
AAGGAACCACGTAAATGAGAGAAAGATTATAGATAATGTAAATGGAGTTG
AATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAGTTGGA
GATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGGTTGAT
GAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAAAAATT
CAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGGCTTATTGTATAAG
GAGGCATTCCTGGAGTGACAATTAAT
back to top