CF836131
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15 Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 2 Query: 143 TKAGTKRGFLETVDLNL---MSSSNDNKHCEENDAMAST-----TTPATKAQVVGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 604 + A T R L T DL L +S+S+ + + A A+ +TP WPP++ + ++A++ + FVKV +EG P RK+DL + Y LL L MF T + + + V G + +V TYED+DGDWM+VGDVPW++F+ S K++R+ + Sbjct: 27 SSAATARRDLST-DLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15 Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 2 Query: 143 TKAGTKRGFLETVDLNL---MSSSNDNKHCEENDAMAST-----TTPATKAQVVGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 604 + A T R L T DL L +S+S+ + + A A+ +TP WPP++ + ++A++ + FVKV +EG P RK+DL + Y LL L MF T + + + V G + +V TYED+DGDWM+VGDVPW++F+ S K++R+ + Sbjct: 27 SSAATARRDLST-DLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 2 Query: 134 CHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAM---ASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNV--NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613 C KR L + DL L + + H + N+ +S TT A G R++ FVKV +EG P RK+DL Y+ L++ L MF +H + + + + N V +V TYED++GDWM+ GDVPW++F+ S KR+R+ ++ + Sbjct: 41 CRPPATAAKRRSLISTDLRLGLTLSSVVHIDGNNPSTPRSSLTTATVTADRGGGGGGHGRRRSL------FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14 Identity = 53/136 (38.97%), Postives = 67/136 (49.26%), Query Frame = 2 Query: 260 ATKAQVVGWPPVRAYRKNA--------------MK------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 562 A+ AQ+VGWPPVR +RKN MK S FVKV +EG RK+DL+ + SY L AL+ MF FL+ I NE + ++ + YV YED +GD MLVGDVPW Sbjct: 36 ASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPW 171
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12 Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 2 Query: 335 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSS 610 +VKV +EG P RK+DL + Y++L+ L+ MF+ + D N +V TY DK+GDWM+VGDVPW+MF+ + +R+++ +++ Sbjct: 86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEE-----DMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12 Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2 Query: 335 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKS 607 +VKV +EG P RK+DL + Y +L++ L+ MF+ + D + +V TY DK+GDWM+VGDVPW+MF+ S +R+++ ++ Sbjct: 84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEE-----DMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169 The following BLAST results are available for this feature:
BLAST of CF836131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836131 ID=CF836131; Name=CF836131; organism=Citrus sinensis; type=EST; length=726bpback to top |