CF836131

Overview
NameCF836131
Unique NameCF836131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSJ (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. japonica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 2
Query:  143 TKAGTKRGFLETVDLNL---MSSSNDNKHCEENDAMAST-----TTPATKAQVVGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 604
            + A T R  L T DL L   +S+S+ +   +   A A+      +TP        WPP++ + ++A++ +              FVKV +EG P  RK+DL +   Y  LL  L  MF   T   + +  +    V G +  +V TYED+DGDWM+VGDVPW++F+ S K++R+ +
Sbjct:   27 SSAATARRDLST-DLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA4_ORYSI (Auxin-responsive protein IAA4 OS=Oryza sativa subsp. indica GN=IAA4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 58/176 (32.95%), Postives = 91/176 (51.70%), Query Frame = 2
Query:  143 TKAGTKRGFLETVDLNL---MSSSNDNKHCEENDAMAST-----TTPATKAQVVGWPPVRAYRKNAMKGSCK------------FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVE--YVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMK 604
            + A T R  L T DL L   +S+S+ +   +   A A+      +TP        WPP++ + ++A++ +              FVKV +EG P  RK+DL +   Y  LL  L  MF   T   + +  +    V G +  +V TYED+DGDWM+VGDVPW++F+ S K++R+ +
Sbjct:   27 SSAATARRDLST-DLRLGLSLSTSSSSSLLQAAAAAAAADDSIPSTPRNSQVHADWPPIKPFLRSALQKASAAGGGGARRRRTLFVKVYMEGVPIGRKLDLLLLDGYDSLLIKLCHMFK--TPITYADVMECHQQVPGQKAAHVLTYEDQDGDWMMVGDVPWELFLSSVKKLRIAR 199          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA8_ORYSJ (Auxin-responsive protein IAA8 OS=Oryza sativa subsp. japonica GN=IAA8 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  134 CHRTKAGTKRGFLETVDLNLMSSSNDNKHCEENDAM---ASTTTPATKAQVVGWPPVRAYRKNAMKGSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNV--NGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSSE 613
            C       KR  L + DL L  + +   H + N+     +S TT    A   G       R++       FVKV +EG P  RK+DL     Y+ L++ L  MF      +H + +  +  +  N V +V TYED++GDWM+ GDVPW++F+ S KR+R+ ++ +
Sbjct:   41 CRPPATAAKRRSLISTDLRLGLTLSSVVHIDGNNPSTPRSSLTTATVTADRGGGGGGHGRRRSL------FVKVYMEGVPIGRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDVPWELFLTSVKRLRIARADD 199          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 53/136 (38.97%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  260 ATKAQVVGWPPVRAYRKNA--------------MK------------------GSCKFVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMF-SFLT--IRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPW 562
            A+ AQ+VGWPPVR +RKN               MK                   S  FVKV +EG    RK+DL+ + SY  L  AL+ MF  FL+  I    NE + ++  +   YV  YED +GD MLVGDVPW
Sbjct:   36 ASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPW 171          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA20_ARATH (Auxin-responsive protein IAA20 OS=Arabidopsis thaliana GN=IAA20 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  335 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKSS 610
            +VKV +EG P  RK+DL   + Y++L+  L+ MF+   +          D  N   +V TY DK+GDWM+VGDVPW+MF+ + +R+++ +++
Sbjct:   86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEE-----DMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISRAN 172          
BLAST of CF836131 vs. ExPASy Swiss-Prot
Match: IAA30_ARATH (Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  335 FVKVAVEGAPYLRKVDLEIYHSYQELLSALEDMFSFLTIRNHVNERKIIDNVNGVEYVPTYEDKDGDWMLVGDVPWKMFVESCKRVRLMKS 607
            +VKV +EG P  RK+DL   + Y +L++ L+ MF+   +          D  +   +V TY DK+GDWM+VGDVPW+MF+ S +R+++ ++
Sbjct:   84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEE-----DMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISRA 169          
The following BLAST results are available for this feature:
BLAST of CF836131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA4_ORYSJ3.492e-1532.95Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA4_ORYSI3.492e-1532.95Auxin-responsive protein IAA4 OS=Oryza sativa subs... [more]
IAA8_ORYSJ5.957e-1532.12Auxin-responsive protein IAA8 OS=Oryza sativa subs... [more]
IAA22_ORYSJ8.602e-1438.97Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA20_ARATH1.242e-1238.04Auxin-responsive protein IAA20 OS=Arabidopsis thal... [more]
IAA30_ARATH2.767e-1238.46Auxin-responsive protein IAA30 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836131 ID=CF836131; Name=CF836131; organism=Citrus sinensis; type=EST; length=726bp
TTTTGTTAACCCATATAACCACATAGCAAAGCAAAATTTGGCAACCTTAG
ACCTAATGACACCGGAAAAAGTTAATCATTTGCCGGAATCCGACACGAAG
CTCACGTTAGGCTTACCCGGCGGCGGCGGCGAGTGTCACCGGACGAAAGC
CGGCACGAAGCGTGGCTTCTTAGAGACCGTTGATCTAAACCTCATGAGCT
CAAGCAACGATAACAAACATTGCGAAGAGAACGATGCAATGGCCTCGACT
ACAACCCCAGCAACCAAGGCACAAGTGGTGGGGTGGCCGCCGGTGAGAGC
ATATCGGAAAAATGCTATGAAGGGCAGCTGCAAATTTGTAAAGGTGGCAG
TTGAAGGAGCTCCATATCTAAGAAAAGTTGACCTTGAGATATACCATAGT
TATCAAGAACTCTTGAGTGCTTTAGAGGATATGTTCTCATTCTTGACTAT
AAGGAACCACGTAAATGAGAGAAAGATTATAGATAATGTAAATGGAGTTG
AATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTAGTTGGA
GATGTGCCATGGAAAATGTTTGTTGAATCTTGCAAGCGAGTAAGGTTGAT
GAAAAGCTCAGAAGCAATTGGGTTAGCTCCAAGAACACCTGCAAAAAATT
CAAGCAAGAGTTGAAGAATGAATAACAGAATAAGGGGCTTATTGTATAAG
GAGGCATTCCTGGAGTGACAATTAAT
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