CF836132

Overview
NameCF836132
Unique NameCF836132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2224 contig Csv1_Contig2224:396..1109. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.130e-45
Identity = 80/178 (44.94%), Postives = 112/178 (62.92%), Query Frame = -1
Query:  193 GNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQ----ELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECA 714
            GN++G PY L TNV+  G  +RE++ HLWFDP  DFHTYS+LWN  +IVF VD  PIR ++N    GV +P+ QPM + +SLWN + WATRGG  K DW++ PF AS+ ++  +AC+W              W+++     L    +   KWV+K ++IY+YC+D  RF   LPKEC+
Sbjct:  118 GNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGNTSFCNGESTENWWNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNKLPKECS 295          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.000e-40
Identity = 81/181 (44.75%), Postives = 112/181 (61.88%), Query Frame = -1
Query:  187 GNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC-VWXXXXXXXXXXXXNPWFS----QELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECAFN 714
            GN  G P  + TNVF+NG+G REQ+F  WFDPT  FHTY +LWNP +IVFYVD  PIR FKN++ +GV +P ++PM++ +SLWN ++WAT GG  K +W  APF A Y+ F+ + C V               W++     +L A  Q+ ++ V+  YM Y+YC D  R+P   P EC +N
Sbjct:  113 GNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNANVCGSTRYWWNTRTYSQLSANEQKVMENVRAKYMTYDYCSDRPRYPVP-PSECRWN 291          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.089e-37
Identity = 79/178 (44.38%), Postives = 112/178 (62.92%), Query Frame = -1
Query:  196 GNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC-VWXXXXXXXXXXXXNPWFS----QELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 714
            GN +G P TL TN+F NG+G+RE++F LWF+PT  +HTY +LWNP +IVFYVD  PIR +KN   NGV +P ++PM++ +SLWN DDWAT GG  K +W+ +PF A +R+F  + C +             N W++    Q L    Q+  + V+  YM Y+YC D  ++ Q  P+EC
Sbjct:  116 GNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDGRSNNVGACESSNYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDRSKY-QTPPREC 289          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.573e-36
Identity = 78/180 (43.33%), Postives = 109/180 (60.56%), Query Frame = -1
Query:  187 GNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFS----QELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECAFN 714
            GN  G    + TNVFTNGKG+REQ+  LWFDP+ DFHTY++LWNP +IV YVD  P+R FKN  S G+ +P ++PM++  SLWN ++WAT GG  K +W+ APF A+++ FN + C                W++     +L  + Q+    V++ YM Y+YC D  RF    P EC +N
Sbjct:  120 GNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCFTNAEKNACGSSAY--WWNTGSYSKLSDSEQKAYTNVRQKYMNYDYCSDKVRF-HVPPSECKWN 294          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.504e-36
Identity = 74/169 (43.79%), Postives = 94/169 (55.62%), Query Frame = -1
Query:  223 GNLSGDPYTLHTNVFTNGKGDR-----EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKR 714
            G   G PY+L TNVF  G GDR     E +F LWFDPT DFH Y++LWNP +IVF+VD  PIR +     N  +FP  +PM +Y S+W+A DWAT  G IK D+   PF A Y+NF    C               P  ++ L       L W Q+N+++YNYC D KR
Sbjct:  121 GTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYN--RKNEAIFP-TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCT-ADSSSSCRPPSPAPMRNRGLSRQQMAALTWAQRNFLVYNYCHDPKR 285          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 76/178 (42.70%), Postives = 98/178 (55.06%), Query Frame = -1
Query:  196 GNLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 714
            G   G PYTL TNV+  G GD     RE +F LWFDPT DFH Y++LW+P+ I+F VD  PIR +   + +   FP  +PM +Y S+W+A  WAT  G  K D+   PFTA Y NF A  C              +P+ S  L     + ++WVQ + M+YNYCKD KR    L  EC
Sbjct:  125 GTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYP--KKSASTFPL-RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCT-AYSSARCYPLSASPYRSGGLTRQQHQAMRWVQTHSMVYNYCKDYKR-DHSLTPEC 297          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.901e-30
Identity = 63/180 (35.00%), Postives = 105/180 (58.33%), Query Frame = -1
Query:  196 GNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATG-----QERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 714
            GN+ G P+   TN++ NG   R  E+++ LWFDP+ +FH YS+LW P +I+F+VD  PIRE    ++ G  +P  +PM +Y+++W+A DWAT GG  K ++  APF A +++F+ + C              +  F +  D +      +  ++  ++ +M Y+YC D+ R+P+ LP EC
Sbjct:  116 GNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLP-EC 293          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 60/181 (33.15%), Postives = 96/181 (53.04%), Query Frame = -1
Query:  187 GNLSGDPYTLHTNVFTNGKGD--REQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPW---FSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECAFN 714
            GN+ G  + + TN++ NG     RE++++LWFDPT DFH YS+LW+   I+FYVD  PIRE K   S G  FP  +PM +YS++W+   WAT GG    ++  AP+ + + +   + C                     + E+  + + +++  ++ +M Y+YC D  R+   L  EC  N
Sbjct:  115 GNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVL-SECVVN 293          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 48/118 (40.68%), Postives = 76/118 (64.41%), Query Frame = -1
Query:  367 GNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 714
            GNL G P+   TN++ NG  +R  E+++ LWFDP+ +FH YS+LW P +I+F+VD  PIRE    E     +P+ +PM +Y+++W+A  WAT GG    D+T +PF + +++   + C
Sbjct:  124 GNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGC 240          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 58/181 (32.04%), Postives = 94/181 (51.93%), Query Frame = -1
Query:  187 GNLSGDPYTLHTNVFTNGK--GDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNP---WFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKECAFN 714
            GN+    + + TN++ NG     RE++++LWFDPT DFH YS+LW+   I+F+VD  PIRE K     G  FP ++PM +Y+++W+   WAT GG    ++  AP+ A + +   + C                     +QE+  + + ++   ++  M Y+YC D  R+   L  EC  N
Sbjct:  115 GNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQFPRCDEGAAEDMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVAL-SECVVN 293          
The following BLAST results are available for this feature:
BLAST of CF836132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH10_ARATH4.130e-4544.94Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH4.000e-4044.75Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH3_ARATH1.089e-3744.38Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.573e-3643.33Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH3.504e-3643.79Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH3.280e-3442.70Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH4.901e-3035.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH9.565e-2633.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.381e-2440.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.381e-2432.04Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836132 ID=CF836132; Name=CF836132; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTTTTTTTTTACAAAGTAACAATATTTTATTACACGTCCTTCT
TATAGTACAAAAAAGAATGAACCATACATTTTATTTGTCACTAAACATTA
GTGCACAGAATAAAAGAACCAAAACATCAAAACTGAAGATTAAAAAAGCT
ATAAACAAAGACATATGGCAAATGGATCAGTTATATATTGAATGCACATT
CTTTTGGGAGCCCTTGGGGAAATCGTTTTGAGTCCTTGCAATAATTATAT
ATCATGTAATTCTTCTGCACCCATTTGAGTCTCTCTTGGCCAGTGGCATC
AAGTTCTTGCGAGAACCATGGATTATTATTTTTTGAGTTGCAAGAGGATT
TTCCATTAGACCAGACGCAAGCATTGGCATTGAAGTTTCTGTAAGAAGCA
GTGAAGGGAGCTTGGGTCCAGTCAGTTTTGATAAGGCCACCTCTCGTGGC
CCAGTCATCGGCGTTCCAGAGACTCGAGTAAATCCTCATCGGCTGGTTTT
TGGGAAAGAGTACGCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGC
GAGCCATCAACATAGAAGACAATACGTTGGGGATTCCAGAGAACGGAATA
GGTGTGAAAGTCAGCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTC
TGTCACCTTTGCCATTTGTGAACACATTAGTATGAAGAGTATAAGGATCA
CCACTTAAATTCCC
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