CF836132

Overview
NameCF836132
Unique NameCF836132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2224 contig Csv1_Contig2224:396..1109. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 58/170 (34.12%), Postives = 93/170 (54.71%), Query Frame = -1
Query:  196 SGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXNPWFSQELDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 705
            +G PY L+TN++  G+G ++Q+F LWFDPT D+H+YS LWNP ++VFYVD +PIR +   ++  V +P  Q M +  S+ N       G +I  D  Q P+ A ++      C                W  ++L +  +      +K Y+ Y+YC D +R+P+ +P+EC
Sbjct:  106 NGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYS--KNPDVYYPSVQTMFLMGSVQN-------GSII--DPKQMPYIAKFQASKIEGCKTEFMGIDKCTDPKFWWNRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPK-VPQEC 263          
BLAST of CF836132 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = -1
Query:  196 GNLSGDPYTLHTNVFTNG--KGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC---------VWXXXXXXXXXXXXNPWFSQELDATGQERLK---WVQKNYMIYNYCKDSKRFPQGLPKEC 714
            G    D +T+ TNV+ NG  +  RE++F+ WFDPT  FH Y+++WN    VF VD  P+R+F N  +    +P ++PM +Y ++W+  +WAT+GG    ++  APF  S  +   + C                       +P   Q+     + ++    W ++  M Y+YC D  R+ + +P EC
Sbjct:  125 GRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRY-KVMPAEC 309          
The following BLAST results are available for this feature:
BLAST of CF836132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH11_ARATH8.953e-2434.12Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH2.605e-2329.95Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836132 ID=CF836132; Name=CF836132; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTTTTTTTTTACAAAGTAACAATATTTTATTACACGTCCTTCT
TATAGTACAAAAAAGAATGAACCATACATTTTATTTGTCACTAAACATTA
GTGCACAGAATAAAAGAACCAAAACATCAAAACTGAAGATTAAAAAAGCT
ATAAACAAAGACATATGGCAAATGGATCAGTTATATATTGAATGCACATT
CTTTTGGGAGCCCTTGGGGAAATCGTTTTGAGTCCTTGCAATAATTATAT
ATCATGTAATTCTTCTGCACCCATTTGAGTCTCTCTTGGCCAGTGGCATC
AAGTTCTTGCGAGAACCATGGATTATTATTTTTTGAGTTGCAAGAGGATT
TTCCATTAGACCAGACGCAAGCATTGGCATTGAAGTTTCTGTAAGAAGCA
GTGAAGGGAGCTTGGGTCCAGTCAGTTTTGATAAGGCCACCTCTCGTGGC
CCAGTCATCGGCGTTCCAGAGACTCGAGTAAATCCTCATCGGCTGGTTTT
TGGGAAAGAGTACGCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGC
GAGCCATCAACATAGAAGACAATACGTTGGGGATTCCAGAGAACGGAATA
GGTGTGAAAGTCAGCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTC
TGTCACCTTTGCCATTTGTGAACACATTAGTATGAAGAGTATAAGGATCA
CCACTTAAATTCCC
back to top