CF836133

Overview
NameCF836133
Unique NameCF836133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2224 contig Csv1_Contig2224:7..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836133 vs. ExPASy Swiss-Prot
Match: CRH1_YEAST (Probable glycosidase CRH1 OS=Saccharomyces cerevisiae GN=CRH1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 61/204 (29.90%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  133 ASASNFYQDFDIT--WGDG---RGKILNNGQLLSLSLDKA-SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQ--QFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLI-----KTDWTQAPFT 705
            A A++F +DF  +  W       G+I      LS++L K       +S    ++GK+++ LK    N  G V+++YL+S     DEID E++G   GD     +N F+ G        +FH    PT  FH Y++ W   +  +Y+DG  +R   N  S G  +P++ PM +   +W   D     G I     +T++  APFT
Sbjct:   53 ALATSFSEDFSSSSKWFTDLKHAGEIKYGSDGLSMTLAKRYDNPSLKSNFYIMYGKLEVILKAA--NGTGIVSSFYLQS--DDLDEIDIEWVG---GDNTQFQSNFFSKGDTTTYDRGEFHGVDTPTDKFHNYTLDWAMDKTTWYLDGESVRVLSNTSSEG--YPQS-PMYLMMGIWAGGDPDNAAGTIEWAGGETNYNDAPFT 246          
BLAST of CF836133 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 64/228 (28.07%), Postives = 101/228 (44.30%), Query Frame = 1
Query:  115 ISSLMVASASNFY--------QDFDITWGDGRGKILNNGQLLSLSLDKA-------------SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLW---NADDWATRGGLIKTDWTQAPFTASYK 717
            IS      A +F+        + FD  W   R  ++N+G  L LS+D+              SG  F++ + Y +G  +  ++ +  +  G V++++     S  + WDEID E LG    +   +  N +TNG+G  E+ + L FD +  +HTY   W P  I +YVDG   RE      +    PK  P +I  + W     DDW      +K    + P TA Y+
Sbjct:  575 ISDFRTGKAGDFFASDGWTNGKPFDCWWYK-RNAVINDG-CLQLSIDQKWTNDKNPDWDPRYSGGEFRTNNFYHYGYYECSMQAMKND--GVVSSFFTYTGPSDDNPWDEIDIEILGK---NTTQVQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDG---REVYRATQD---IPKT-PGKIMMNAWPGLTVDDW------LKAFNGRTPLTAHYQ 782          
BLAST of CF836133 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  199 NNGQLLSLSLDKASGSGFQSKS-EY----LFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPI-REFKNLESNGVLFPKNQPMRIYSSLW---NADDWATR 663
            +NG+++ L+LD+  G  +  KS EY     FG    ++++    + G V++++     S  + WDEID EFLG    D      N + N  G  E   +L FD + DFHTY   W P  I FYVDG  + R  +N+           P +I  +LW     D+W  R
Sbjct:   72 SNGKMI-LTLDREYGGSYPYKSGEYRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGK---DTTKAQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRNIPVT--------PGKIMMNLWPGKGVDEWLGR 226          
BLAST of CF836133 vs. ExPASy Swiss-Prot
Match: CRF1_ASPFU (Probable glycosidase crf1 OS=Aspergillus fumigatus GN=crf1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  268 YLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTAD----FHTYSVLWNPQRIVFYVDGSPIREFK-NLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIK-----TDWTQAPFTASYKN 720
            + FGK ++ +K  PG   G V++  L+S     DE+D+E LG   GD   + TN F  GKGD        + P A     FHTY++ W    + + +DG+ +R    N    G  FP+  PMR+    W   D +   G I+     TD++  P+T   K+
Sbjct:   89 FFFGKAEVVMKAAPGT--GVVSSIVLES--DDLDEVDWEVLG---GDTTQVQTNYF--GKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWSIDGAVVRTLTYNDAKGGTRFPQT-PMRLRLGSWAGGDPSNPKGTIEWAGGLTDYSAGPYTMYVKS 239          
The following BLAST results are available for this feature:
BLAST of CF836133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CRH1_YEAST7.225e-1329.90Probable glycosidase CRH1 OS=Saccharomyces cerevis... [more]
XYND_RUMFL9.436e-1328.07Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
GUB_CLOTM9.436e-1332.34Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]
CRF1_ASPFU8.832e-1131.68Probable glycosidase crf1 OS=Aspergillus fumigatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836133 ID=CF836133; Name=CF836133; organism=Citrus sinensis; type=EST; length=722bp
GAGAGAGAGCCCTTAAATACCAACCCTTATAAGCTGCTTTCTGAAAACTC
CCTCTTTATTGATTGCAGTACTATGGCTTACTCGAAAAATTTTACCCTGC
TCATCTCTATAGCAATCAGCTCTTTGATGGTTGCTTCTGCTAGTAATTTC
TACCAAGACTTTGATATCACTTGGGGAGATGGCCGTGGTAAGATACTCAA
CAACGGCCAGCTTCTCTCCCTCTCCCTTGACAAAGCCTCAGGCTCAGGCT
TCCAGTCCAAGAGCGAGTACCTTTTTGGCAAAATCGACATGCAACTCAAG
CTTGTCCCTGGCAATTCTGCCGGCACAGTCACCGCCTACTACTTAAAATC
ACCAGGATCAACATGGGATGAGATAGACTTCGAATTCTTGGGGAATTTAA
GTGGTGATCCTTATACTCTTCATACTAATGTGTTCACAAATGGCAAAGGT
GACAGAGAGCAACAATTCCACCTCTGGTTTGACCCCACTGCTGACTTTCA
CACCTATTCCGTTCTCTGGAATCCCCAACGTATTGTCTTCTATGTTGATG
GCTCGCCAATTAGAGAGTTCAAGAACTTGGAATCAAACGGCGTACTCTTT
CCCAAAAACCAGCCGATGAGGATTTACTCGAGTCTCTGGAACGCCGATGA
CTGGGCCACGAGAGGTGGCCTTATCAAAACTGACTGGACCCAAGCTCCCT
TCACTGCTTCTTACAAAAACTT
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