CF836142

Overview
NameCF836142
Unique NameCF836142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836142_ssr587 microsatellite CF836142_ssr587:587..600. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5157 contig Csv1_Contig5157:78..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFV+A AA  K+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFV+A AA  K+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.660e-38
Identity = 75/131 (57.25%), Postives = 95/131 (72.52%), Query Frame = -3
Query:  176 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAG 568
            VKDV+  EFV+A AA  K+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +YLRGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAG 136          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.168e-38
Identity = 71/138 (51.45%), Postives = 102/138 (73.91%), Query Frame = -3
Query:  170 TAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDS-KGGRRITSSGQRDLDQVAGRI 580
            TA  +KDV P EF+  YA   K++G++++P WNDI KT T +EL P +PDW Y R A++ARK+Y+RGG GV ++RR++GG +RNG RP HF+  +G   R+ L QLQ+  +IE D+ KGGR IT++G+RDLD++A +I
Sbjct:    4 TAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQI 141          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.830e-38
Identity = 76/137 (55.47%), Postives = 98/137 (71.53%), Query Frame = -3
Query:  158 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 568
            VKDV+  EFV+A AA  K+SGK+++P W DIVK    KELAP D +W+YIRAAS  R +YLRGG+GVGS  +IYGG KRNG  P HFS  S +VAR +L  L+   ++E D  GGRR+T  G RDLD++AG++A  +
Sbjct:    8 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLDRIAGQVAAAS 144          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.308e-38
Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = -3
Query:  179 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 571
            +VKDV   +F+ AYAA  KRSGK+  P W DIVKTGT KELAPYDPDWYY+RAA++AR IYLR  +GVG   ++YGG    G RP H    SGSV R ++  L+   ++E    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.239e-38
Identity = 74/137 (54.01%), Postives = 100/137 (72.99%), Query Frame = -3
Query:  158 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 568
            VKDV+  EFV+A AA  K+SGK+++P W D+VK G  KELAP D +W+YIRAAS  R +YLRGG GVGS  +IYGG +RNG  P H+S+ S +VAR +L  L+   +IE D  GGRR+T+ G RDLD++AG+++  +
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVSAAS 142          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.076e-37
Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = -3
Query:  179 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVA 571
            +VKDV   +F+ AYAA  KRSGK+  P W DIVKTGT KELAPYDPDWYY+RAA++AR IYLR  +GVG   ++YGG    G RP H    SGSV R ++  L+   ++E    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.190e-36
Identity = 73/134 (54.48%), Postives = 97/134 (72.39%), Query Frame = -3
Query:  167 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRIA 568
            VKDV+  EFV+A AA  K+SGK+++P W D+VK G  KELAP D +W+YIR+AS  R +YLRGG GVGS  +IYG  +RNG  P H+S  S +VAR +L  L+   +IE D  GGRR+T+ G RDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVA 139          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.554e-36
Identity = 67/134 (50.00%), Postives = 95/134 (70.90%), Query Frame = -3
Query:  170 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 571
            +VKDV  H F KA AA  K+SGK+++P W  I+K     EL+PYD DW+Y RAAS+ R +Y+R   GVG+  +IYG  KRNG+ P H+ +SSGSVAR +L  L+   ++E D+ GGR++TS GQ+DLD++A ++
Sbjct:    4 SVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDANGGRKLTSQGQKDLDRIAAQV 137          
The following BLAST results are available for this feature:
BLAST of CF836142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_HUMAN1.961e-3956.7240S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN1.961e-3956.7240S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19_PIG1.660e-3857.2540S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19_DICDI2.168e-3851.4540S ribosomal protein S19 OS=Dictyostelium discoid... [more]
RS19_ICTPU4.830e-3855.4740S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19B_SCHPO6.308e-3855.7340S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19_GILMI8.239e-3854.0140S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19A_SCHPO1.076e-3755.7340S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_PAGMA1.190e-3654.4840S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]
RS19_AEQIR1.554e-3650.0040S ribosomal protein S19 OS=Aequipecten irradians... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836142 ID=CF836142; Name=CF836142; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTAATATGAAAAAGAATATTCATCTCTATAAAATCTTAGGGTACTA
ACAGAGAACTGAAAATCCCCTTAAAAGGCTTTCTATCTACTACTCCCATT
CAAACAACTAACTCAATAACATCAATCCTTTTGAAAGCTTGAGCTAATCC
CTCAAGGGGCAACAACTGCAATCCGTCCAGCAACTTGATCAAGATCCCGC
TGCCCACTGGATGTGATTCTCCTTCCACCCTTGGAGTCAAGCTCGATGAT
GTTCGTGTCCTGCAATTGGTGAAGTATGTGACGAGCAACAGAGCCACTGC
TCTTGCTGAAATGAGGTGGGCGGCTACCGTTCCTCTTCCCCCCTCCATAG
ATTCTACGGAAGGAACCAACACCAAGACCACCCCTCAAGTAAATCTTCCT
CGCCATTGAAGCAGCCCTGATATAGTACCAATCGGGGTCATAAGGGGCTA
GCTCCTTCAACGTTCCAGTCTTGACGATGTCGTTCCAAGTAGGAAGCTCA
ATCTTGCCGGAGCGCTTGAAATGGGCGGCGTAGGCCTTGACGAACTCGTG
GGGAGAGACGTCCTTCACGTTTTTTGCAGTCTCCATTCTCTCTCTCTCTC
AGTCTGTGCTTCAGCGGC
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