CF836142

Overview
NameCF836142
Unique NameCF836142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836142_ssr587 microsatellite CF836142_ssr587:587..600. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5157 contig Csv1_Contig5157:78..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_EMENI (40S ribosomal protein S19 OS=Emericella nidulans GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.426e-34
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = -3
Query:  179 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELD-SKGGRRITSSGQRDLDQVA 568
            V+DV   +F+ AYAA  KR GK+ +P W D VKT    EL P D DWYY+RAA++AR IYLR  +GVG  R+++G  K  GSRP H   +SG+V R +L  L+   ++E D  KGGRRIT SGQRDLD++A
Sbjct:    6 VRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHIYLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEEKGGRRITQSGQRDLDRIA 136          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19S_ASCSU (40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.231e-33
Identity = 66/135 (48.89%), Postives = 93/135 (68.89%), Query Frame = -3
Query:  170 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQVAGRI 571
            +VKDV  HE V+  A   K+SGK+++P W+D+VK G  KELAP D DWYY+R AS+AR++Y+R   GVG+ RR+YGG KR G  P HF+++SGSV R  L  L+    +E    G GR +T  G++DLD++A ++
Sbjct:    6 SVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTASVARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPDGNGRILTKQGRKDLDRIASQM 140          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.582e-33
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = -3
Query:  170 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 568
            VKD+  H   KA A   K++GK+++P   DIVKT   KELAPYDPDW+Y+R AS+ R +Y R   GVGS  +IYGG KRNG  P HF +++   AR  L  L+   ++E    GGR+++S GQRDLD++A +I
Sbjct:    6 VKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQI 138          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_ENTHI (40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.505e-31
Identity = 66/138 (47.83%), Postives = 90/138 (65.22%), Query Frame = -3
Query:  173 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGR 586
            M    N+KDV   +F+KAYA H K+SGK+E+P W D VKTG  KELAP +PDW YIRAA++ARK+YL  G+GV + RR YG        P H +  SG V R+IL QL+   I+    + GR +T  G++D+D++A +
Sbjct:    1 MHHFSNIKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKVYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIVG-KIQSGRSLTKEGRKDMDKIASK 137          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19G_ASCSU (40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.719e-31
Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = -3
Query:  170 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQVAGRI 586
            M  A +VKDV  HE V+  A   K+SGK+++P W+D+ K G  KELAP + DWYY+R AS+AR++Y+R   GV + R +YGG KR G  P HF+K+SGSV R  L  L+    ++    G GR +T  G++DLD++A ++
Sbjct:    1 MVKATSVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTASIARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVLTKQGRKDLDRIASQM 140          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19_CAEEL (40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = -3
Query:  179 METAKNVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKG-GRRITSSGQRDLDQVA 586
            M  A ++KDV  HE  K+ A   K+SGK+++P W+D+VK G  KELAP DPDW+Y RAAS+AR +Y R   G+G+F+++YGG KR G  P HF  S+G+  R  + QL+    +E    G GR ++  G++DLD++A
Sbjct:    1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFRPA-GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRILSKQGRKDLDRIA 136          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19B_YEAST (40S ribosomal protein S19-B OS=Saccharomyces cerevisiae GN=RPS19B PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30
Identity = 62/134 (46.27%), Postives = 92/134 (68.66%), Query Frame = -3
Query:  173 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGR 571
            +V+DV+  +F+ AYA+  +R GK+E+P + DIVKT +  E+ P D + W+Y RAAS+AR IY+R  +GVG   ++YGG K  G RP     +SGS+ R +L  L+   I+E+  KGGRRI+ +GQRDLD++A +
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQ 138          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19A_YEAST (40S ribosomal protein S19-A OS=Saccharomyces cerevisiae GN=RPS19A PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30
Identity = 62/134 (46.27%), Postives = 92/134 (68.66%), Query Frame = -3
Query:  173 NVKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPD-WYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGR 571
            +V+DV+  +F+ AYA+  +R GK+E+P + DIVKT +  E+ P D + W+Y RAAS+AR IY+R  +GVG   ++YGG K  G RP     +SGS+ R +L  L+   I+E+  KGGRRI+ +GQRDLD++A +
Sbjct:    5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQ 138          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19B_DROME (40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  170 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 568
            VK++  H   K  AA  K+SGKI +P     +KTG  KE AP D DW+Y R AS+ R +YLR   GVG+F ++Y G KRNG RP    +SS    R  L  L+  N++E    GGR++T  GQR+LD++A +I
Sbjct:    6 VKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLTPQGQRNLDRIANKI 138          
BLAST of CF836142 vs. ExPASy Swiss-Prot
Match: RS19E_METTH (30S ribosomal protein S19e OS=Methanobacterium thermoautotrophicum GN=rps19e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  170 VKDVSPHEFVKAYAAHFKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYLRGGLGVGSFRRIYGGGKRNGSRPPHFSKSSGSVARHILHQLQDTNIIELDSKGGRRITSSGQRDLDQVAGRI 568
            V DV     +   A   K   K++ P W + VKTG  KE  P +PDW+Y+RAA++ R++Y+ G +GV S R  YGG K  GSRP  F + SG++ R  L QL+++ +I+ + + GR IT  G+  LD+ A  +
Sbjct:    4 VYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIKRE-ENGRVITPEGRSFLDKAAAEV 135          
The following BLAST results are available for this feature:
BLAST of CF836142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS19_EMENI9.426e-3452.6740S ribosomal protein S19 OS=Emericella nidulans G... [more]
RS19S_ASCSU1.231e-3348.8940S ribosomal protein S19S OS=Ascaris suum GN=RPS1... [more]
RS19A_DROME3.582e-3348.8740S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19_ENTHI1.505e-3147.8340S ribosomal protein S19 OS=Entamoeba histolytica... [more]
RS19G_ASCSU5.719e-3145.7140S ribosomal protein S19G OS=Ascaris suum GN=RPS1... [more]
RS19_CAEEL7.469e-3145.9940S ribosomal protein S19 OS=Caenorhabditis elegan... [more]
RS19B_YEAST6.323e-3046.2740S ribosomal protein S19-B OS=Saccharomyces cerev... [more]
RS19A_YEAST6.323e-3046.2740S ribosomal protein S19-A OS=Saccharomyces cerev... [more]
RS19B_DROME1.722e-2745.1140S ribosomal protein S19b OS=Drosophila melanogas... [more]
RS19E_METTH2.573e-2339.8530S ribosomal protein S19e OS=Methanobacterium the... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02H19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836142 ID=CF836142; Name=CF836142; organism=Citrus sinensis; type=EST; length=618bp
TTTTTTAATATGAAAAAGAATATTCATCTCTATAAAATCTTAGGGTACTA
ACAGAGAACTGAAAATCCCCTTAAAAGGCTTTCTATCTACTACTCCCATT
CAAACAACTAACTCAATAACATCAATCCTTTTGAAAGCTTGAGCTAATCC
CTCAAGGGGCAACAACTGCAATCCGTCCAGCAACTTGATCAAGATCCCGC
TGCCCACTGGATGTGATTCTCCTTCCACCCTTGGAGTCAAGCTCGATGAT
GTTCGTGTCCTGCAATTGGTGAAGTATGTGACGAGCAACAGAGCCACTGC
TCTTGCTGAAATGAGGTGGGCGGCTACCGTTCCTCTTCCCCCCTCCATAG
ATTCTACGGAAGGAACCAACACCAAGACCACCCCTCAAGTAAATCTTCCT
CGCCATTGAAGCAGCCCTGATATAGTACCAATCGGGGTCATAAGGGGCTA
GCTCCTTCAACGTTCCAGTCTTGACGATGTCGTTCCAAGTAGGAAGCTCA
ATCTTGCCGGAGCGCTTGAAATGGGCGGCGTAGGCCTTGACGAACTCGTG
GGGAGAGACGTCCTTCACGTTTTTTGCAGTCTCCATTCTCTCTCTCTCTC
AGTCTGTGCTTCAGCGGC
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