CF836144

Overview
NameCF836144
Unique NameCF836144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1145 contig Csv1_Contig1145:15..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.415e-48
Identity = 98/177 (55.37%), Postives = 122/177 (68.93%), Query Frame = -1
Query:  198 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 725
            LA+ NLP PF TL  LK  F NVGLN ++DLVALSG HTFG+ QC+F   RL+NF+ TG PDP            LCP  GN S L + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V +F+++   FF +F  +M RMGN++ LTGTQG+IR NCR VN+N+L
Sbjct:  163 LANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNSL 339          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.380e-48
Identity = 97/177 (54.80%), Postives = 119/177 (67.23%), Query Frame = -1
Query:  198 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 725
            LA+ NLP P  TL  LK  F NVGLN  +DLVALSG HTFG+ QC+F   RL+NF+ TG PDP             CP+ GN SVL + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V +++     FF +F  +M RMGN++ LTGTQGEIR NCR VN+N+L
Sbjct:  142 LANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPRNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNSL 318          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.199e-47
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = -1
Query:  207 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNA 725
            LA+ NLP P  TL +LK +F NVGL+  +DLVALSG HTFG+ QCQF   RL+NF+ +G PDP             CP+ GN SVL + DL TP  FDN Y+ NL+ N GL+QSDQELFS+P A DTIP+V  ++  +  FF++F  +MIRMGNLS  TG QGEIR NCR VN+
Sbjct:  157 LANDNLPGPSSTLQVLKDKFRNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNSGKPDPTLDKSYLSTLRKQCPRNGNLSVLVDFDLRTPTIFDNKYYVNLKENKGLIQSDQELFSSPDASDTIPLVRAYADGQGKFFDAFVEAMIRMGNLSPSTGKQGEIRLNCRVVNS 330          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 95/178 (53.37%), Postives = 120/178 (67.42%), Query Frame = -1
Query:  198 SLADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 728
            +LA+ NLP PF TL  LK  F NVGL+  +DLVALSG HTFG+ QCQF   RL+NF+ TG PDP             CP+ GN +VL + DL TP  FDN Y+ NL+   GL+Q+DQELFS+P A DTIP+V  ++     FF +F  +M RMGN++ LTGTQG+IR NCR VN+N+L
Sbjct:  161 ALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQTVLVDFDLRTPTVFDNKYYVNLKELKGLIQTDQELFSSPNATDTIPLVREYADGTQKFFNAFVEAMNRMGNITPLTGTQGQIRQNCRVVNSNSL 338          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.565e-47
Identity = 97/177 (54.80%), Postives = 118/177 (66.67%), Query Frame = -1
Query:  198 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 725
            LA+ NLP PF TL  LK  F  VGL+  +DLVALSG HTFG+ QC+F   RL+NF+ TG PDP             CP  GN SVL + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V +F+     FF +F  +M RMGN++ LTGTQGEIR NCR VN+N+L
Sbjct:  161 LANANLPAPFFTLPQLKDAFAKVGLDRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPLNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNSL 337          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.670e-47
Identity = 95/176 (53.98%), Postives = 120/176 (68.18%), Query Frame = -1
Query:  201 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTP-GADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANN 725
            LA+ NLP P  TL  LK RF NVGL+ ++DLVALSG HTFG++QCQF   RL+NF  TG PDP             CP+ GN SVL + DL TP  FDN Y+ NL+ N GL+QSDQELFS+P  ADT+P+V  ++  +  FF++F  ++IRM +LS LTG QGEIR NCR VN+ +
Sbjct:  155 LANDNLPGPSSTLKQLKDRFKNVGLDRSSDLVALSGGHTFGKSQCQFIMDRLYNFGETGLPDPTLDKSYLATLRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKS 330          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.670e-47
Identity = 96/177 (54.24%), Postives = 119/177 (67.23%), Query Frame = -1
Query:  198 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 725
            LA+ NLP PF TL  LK  F NVGL+  +DLVALSGAHTFG+ QC+F   RL+NF+ TG PDP             CP+ GN SVL + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V  ++     FF +F  +M RMGN++  TGTQG+IR NCR VN+N+L
Sbjct:  164 LANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQSVLVDFDLRTPLVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNSL 340          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.325e-46
Identity = 96/177 (54.24%), Postives = 117/177 (66.10%), Query Frame = -1
Query:  198 LADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGA-DTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVNANNL 725
            LA+ NLP PF TL  LK  F NVGL+  +DLVALSG HTFG+ QCQF   RL+NF+ TG PDP            LCP  GN S L + DL TP  FDN Y+ NL+   GL+QSDQELFS+P A DTIP+V  ++     FF +F  +M RMGN++  TGTQG+IR NCR VN+N+L
Sbjct:  163 LANANLPAPFFTLPQLKASFRNVGLDRPSDLVALSGGHTFGKNQCQFILDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNRSALVDFDLRTPTVFDNKYYVNLKERKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNSL 339          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER58_ARATH (Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.525e-42
Identity = 87/168 (51.79%), Postives = 113/168 (67.26%), Query Frame = -1
Query:  210 LPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNG-TGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 710
            LP    +L++L  +F+   L D TDLVALSGAHTFGR QC   + RL NF+G +G  DP             CPQGG+ +   NLD ++PD FDNDYF NLQ N G+++SDQ LFS+ GA T+ +VN F+ N+  FF +FA SMI+MGN+ +LTG +GEIR +CRRVN
Sbjct:  163 LPLGPDSLEILTSKFSVHNL-DTTDLVALSGAHTFGRVQCGVINNRLHNFSGNSGQSDPSIEPEFLQTLRRQCPQGGDLTARANLDPTSPDSFDNDYFKNLQNNRGVIESDQILFSSTGAPTVSLVNRFAENQNEFFTNFARSMIKMGNVRILTGREGEIRRDCRRVN 329          
BLAST of CF836144 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.129e-40
Identity = 89/171 (52.05%), Postives = 112/171 (65.50%), Query Frame = -1
Query:  210 ADQNLPTPFQTLDLLKGRFTNVGLNDNTDLVALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPXXXXXXXXXXXXLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQANNGLLQSDQELFSTPGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEIRSNCRRVN 722
            A   LP+PF+ +  LK +F  V L D+TDLVALSGAHTFG+++CQFF +RL       NPD              C  G +  V  NLD +TP+ FD +Y++NLQ+N G L SDQ L STPG DT+ IVN F++++  FFESF  SMI MGN+  LTG QGEIRSNCRR+N
Sbjct:  129 AIDGLPSPFENVTQLKRKFDRVDL-DSTDLVALSGAHTFGKSRCQFFDRRL----NVSNPDSTLNPRYAQQLRQACSSGRDTFV--NLDPTTPNKFDKNYYTNLQSNTGPLTSDQVLHSTPGEDTVKIVNLFAASQNQFFESFGQSMINMGNIQPLTGNQGEIRSNCRRLN 292          
The following BLAST results are available for this feature:
BLAST of CF836144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER1A_ARMRU2.415e-4855.37Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER1C_ARMRU5.380e-4854.80Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER2_ARMRU1.199e-4755.17Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER32_ARATH1.565e-4753.37Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER1B_ARMRU1.565e-4754.80Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER38_ARATH2.670e-4753.98Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER33_ARATH2.670e-4754.24Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER34_ARATH1.325e-4654.24Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER58_ARATH7.525e-4251.79Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=... [more]
PER2_CUCSA4.129e-4052.05Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02H20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836144 ID=CF836144; Name=CF836144; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTTTTTTTTTTCCAACGGGCTCATAATTTTATTCAGATTCCGAAT
AATATTGTTAGGACAAACACGAGACAAGGTACATGAGTTTGTTACCCACA
AACTCTCAACAGCAAAACTACTTCACACAGTTTTATTTTATGCTTTCATG
ATTTAGATAGAGCTGACCAAACCGCCATCTGATGATGATCTGGTTGATAA
ATTGTTTGCATTAACCCTTCTGCAGTTTGACCTGATCTCTCCTTGAGTCC
CTGTTAGAAGGCTTAAATTCCCCATTCTGATCATAGAAACCGCAAAGCTT
TCAAAGAAAGCAGTTTCGTTGCTGCTAAAGTTGTTGACAATGGGAATGGT
ATCGGCGCCGGGTGTCGAAAACAGCTCTTGATCACTCTGTAAAAGGCCAT
TGTTAGCTTGAAGATTGGAGAAATAATCGTTGTCAAAACCATCCGGTGTT
GAGAGATCAAGATTCGTTAGGACGCTGCCATTGCCACCTTGCGGGCACAG
CTGCTGCAGTTGTGCTAAGAGAGTTGCGTTCAGCGTTGGGTCTGGATTGC
CAGTTCCATTGAAATTGAATAATCTTTGGCTGAAAAATTGACACTGTGCC
CTTCCAAAAGTGTGAGCGCCGGAGAGTGCAACCAGATCAGTATTGTCGTT
GAGACCGACATTTGTAAATCTGCCTTTGAGCAAATCAAGAGTCTGAAATG
GTGTTGGAAGATTCTGATCTGCAAGGCT
back to top