CF836154

Overview
NameCF836154
Unique NameCF836154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 3
Query:   87 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------RFR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPA-TDMEALKSPLMGIFEKRRARKFFIYV 509
            DV+++GTGL+E IL+  LS  G +VLH+D N YYG   S+L + QL K           +F+       G +Q   +  +S+DY +D+ PK +     L+ +LI + V +YL F+++    V+ N     KV A T  +      + +  KR   KF  ++
Sbjct:    5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQFQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTKRYLMKFLKFL 163          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: RAE2_HUMAN (Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 41/160 (25.62%), Postives = 83/160 (51.88%), Query Frame = 3
Query:  276 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            R +N+D++ K + + G L+ +LI +DV++Y+ FK V     + +GKV +VP +  +   S  + + EKR   KF  +  +Y+++     E     + +  E +    L  N   F+ H++A+  +    +   +D +   K + + + RF G +P+++PL
Sbjct:  227 RRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQH---PDEYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSES---SCTTIDGLNATKNFLQCLGRF-GNTPFLFPL 379          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 41/160 (25.62%), Postives = 83/160 (51.88%), Query Frame = 3
Query:  276 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y E+ P  ++  + T  T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PL
Sbjct:  237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPL 389          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 40/160 (25.00%), Postives = 82/160 (51.25%), Query Frame = 3
Query:  276 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +   +T  E +    L  N    + H++A+  +        +D +K  K +   + R+ G +P+++PL
Sbjct:  225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPL 377          
BLAST of CF836154 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 40/162 (24.69%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  276 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL 755
            R +N+D++ + + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++PL
Sbjct:  222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSCTVDGLKATKKFLQCLGRY-GNTPFLFPL 374          
The following BLAST results are available for this feature:
BLAST of CF836154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RAEP_CANAL2.286e-1231.68Rab proteins geranylgeranyltransferase component A... [more]
RAE2_HUMAN2.985e-1225.63Rab proteins geranylgeranyltransferase component A... [more]
RAE1_MOUSE6.650e-1225.63Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN6.650e-1225.00Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT1.935e-1124.69Rab proteins geranylgeranyltransferase component A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02I02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836154 ID=CF836154; Name=CF836154; organism=Citrus sinensis; type=EST; length=755bp
AGGCTTCACTTTGACCTAACCCACAAAACCCTCTGAATCAGAAATCAAAA
ATCAAAAATCAAATCATCAACATGGATGAAGAGTATGATGTCATCGTCTT
GGGAACCGGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTTGATG
GCCTCAAGGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGAGTCA
TCATCGCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACA
ACCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCC
CGAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACT
GATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTA
TAATAAAGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGCGCTCA
AATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTC
ATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAAT
GGACTTGACCAGGGTGACCACTAGAGAGCTGATTGCGAAGTATGGTCTTG
ATGACAACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGAT
GATCGTTACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTT
ATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCACCATACATTTACC
CTCTG
back to top