CF836158

Overview
NameCF836158
Unique NameCF836158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 82/212 (38.68%), Postives = 103/212 (48.58%), Query Frame = -3
Query:  152 LTLYLTWVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 784
            L ++    +AATF I NNC YTVW AA+P GGG++LD+GQ W LNV  GT + RIW RT C F+G G G CQTGDC G L C   G P  TLAEF++      D+ DIS ID +N+ M+FS           C+     QC +                                       CPDAY  P D  T   +C   +NY++ FCP
Sbjct:   12 LAVFAASASAATFTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFNG-GSGSCQTGDCAGALSCTLSGQPA-TLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDDPKT--HSCNTNSNYQITFCP 169          
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.869e-30
Identity = 67/179 (37.43%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  152 PGTKAARIWARTNCQFDGAGRGRCQTGDCG-GLLQCQAYGS-PPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG-GCNRVIRCTADIVGQCPNELRVPGG------CNGPCPVFKTEEHCCNSGK-----CGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 646
            P   + R W RT C  D AG+  C+T DCG G + C   G+ PP TL E  +      D+ D+S +DGFN+PM  +   G G  +   C A++   CP +L+V         C   C  F   ++CC         C PT++S  F+++CP AYSY  DD  S FTC GG +Y + FCP
Sbjct:   34 PSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 80/212 (37.74%), Postives = 102/212 (48.11%), Query Frame = -3
Query:  152 LTLYLTWVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 784
            L ++    +AATF I NNC +TVW A +P GGG +L+  Q+  +NV  GT A RIW RT C F+  GRG C TGDC G L C   G P  TLAE+ +   Q  DF DIS IDGFN+ M+FS           C+  +  +C +                                       CPDAY +P D AT    C G +NY++ FCP
Sbjct:   12 LAVFAAGASAATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQPA-TLAEYTIGGSQ--DFYDISVIDGFNLAMDFS-----------CSTGVALKCRD-------------------------------------ANCPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.199e-29
Identity = 81/212 (38.21%), Postives = 103/212 (48.58%), Query Frame = -3
Query:  152 LTLYLTWVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 784
            L ++    +AATF I NNC +TVW A +P GGG +L+  Q+  +NV  GT A RIW RT C F+  GRG C TGDC G L C   G P  TLAE+ +   Q  DF DIS IDG+N+ M+FS  +G   +                                  C +SG              CPDAY +P D AT    C G +NY++ FCP
Sbjct:   12 LAVFAAGASAATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQPA-TLAEYTIGGSQ--DFYDISVIDGYNLAMDFSCSTGVALK----------------------------------CRDSG--------------CPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.871e-29
Identity = 79/212 (37.26%), Postives = 102/212 (48.11%), Query Frame = -3
Query:  152 LTLYLTWVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 784
            L ++    +AATF I NNC +TVW A +P GGG +L+  Q+  +NV  GT A RIW RT C F+  GRG C TGDC G L C   G P  TLAE+ +   Q  DF DIS IDG+N+ M+FS           C+  +  +C +                                       CPDAY +P D AT    C G +NY++ FCP
Sbjct:   12 LAVFAAGASAATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQPA-TLAEYTIGGSQ--DFYDISVIDGYNLAMDFS-----------CSTGVALKCRD-------------------------------------ANCPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.750e-29
Identity = 77/219 (35.16%), Postives = 109/219 (49.77%), Query Frame = -3
Query:  155 NNCPYTVWAAAVPGGGRR-LDRG----QNWPLNVNPGTKA---ARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYG-SPPNTLAEFALNQFQNLDF--IDISNIDGFNVPMEFSSVSG-GCNRVIRCTADIVGQCPNELRVPG--------GCNGPCPVFKTEEHCCNSG-----KCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFC 736
            NNCPYT+W A  P  G   L+RG     +      P   A    RIWART C +   G+  C TGDCGG ++C   G + P TLA+F L+   + DF    +S +DGFN+P+  +   G G   V+ C A+++  CP  L+           GC   C  FK++E CC +       C P+ +S+FFK  CP  ++Y  D  + +  C      KV+FC
Sbjct:   35 NNCPYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNYQH-GKFYCATGDCGGRIECDGLGGAAPATLAQFVLHH-GHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFC 251          
BLAST of CF836158 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.275e-26
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  503 LTLYLTWVNAATFDIRNNCPYTVWAAAVPGGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEF 784
            ++ ++    A  FDI+N C YTVWAA +PGGG+RLD+GQ W +N+  GT +AR W RT C FD +G+G CQTGDCG  L C   G+ P TLAE+
Sbjct:   10 ISSHMQEAGAVKFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
The following BLAST results are available for this feature:
BLAST of CF836158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RST4_AVESA4.007e-3138.68Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
TP1B_MALDO9.869e-3037.43Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
RST1_AVESA1.289e-2937.74Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA2.199e-2938.21Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA2.871e-2937.26Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
OLP1_SOLLC3.750e-2935.16Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
PRR3_JUNVI2.275e-2653.19Pathogenesis-related protein (Fragment) OS=Juniper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836158 ID=CF836158; Name=CF836158; organism=Citrus sinensis; type=EST; length=789bp
AACTCTACTTTAGAAGATTTATTAATGCCTCACGGCTTGAAGCCACAAAG
GCAAATTAAAGCCTTATTCCTTACACATATATTGCAGCGACCTTACAACG
TATAGCAGATAATTCCAACCAACAAATGATAGGCAGCTGATTCAATCTTC
ACGGGCAGAACACAACCTTATAATTAGTCCCACCAGGACAAGTGAAGACG
CTTGTTGCATCATCTTTAGGGTAACTATAAGCATCCGGGCACCTTTCCTT
GAAAAACCTGGAGAATTTTGTAGGTCCACATTTGCCTGAATTGCAACAGT
GCTCTTCGGTCTTGAACACGGGACATGGCCCATTACATCCTCCGGGAACC
CTCAATTCATTCGGGCACTGCCCGACAATATCAGCCGTACATCTAATCAC
ACGGTTGCATCCTCCGGACACCGAACTGAATTCCATAGGAACATTAAACC
CATCAATGTTCGAAATATCAATAAAATCCAAGTTTTGGAACTGGTTTAGT
GCAAATTCAGCTAAGGTGTTGGGGGGTGAGCCATAGGCTTGACATTGGAG
TAGTCCCCCACAGTCACCAGTCTGGCACCGCCCGCGCCCGGCTCCATCGA
ATTGGCAGTTCGTCCTAGCCCAGATGCGGGCTGCCTTGGTGCCGGGGTTG
ACATTAAGGGGCCAGTTTTGGCCACGGTCGAGTCTCCTGCCTCCGCCTGG
CACTGCTGCAGCCCAGACCGTGTAGGGGCAATTGTTTCTGATATCGAAAG
TGGCTGCGTTGACCCAAGTTAAGTATAGGGTGAGAAAAA
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