CF836159

Overview
NameCF836159
Unique NameCF836159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 81/231 (35.06%), Postives = 108/231 (46.75%), Query Frame = 2
Query:   38 LYLTLVNAATFDIRNNCPYTVWAAAVPGG--------GRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCG-GLLQCQAYGS-PPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG-GCNRVIRCTADIVGQCPNELRVPGG------CNGPCPVFKTEEHCCNSGK-----CGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 664
            L+ +  +AA     N C YTVW   + G         G  L  G +  ++  P   + R + RT C  D +G+  C T DCG G + C   G+ PP TL E  +      DF D+S +DGFN+PM  +   G G  +   C ADI   CP  L+V G       C   C  F   ++CC         C P  +S+ FK +CP AYSY  DD +S FTC G   Y + FCP
Sbjct:   17 LFFSGAHAAKITFTNKCSYTVWPGTLTGDQKPQLSLTGFELATGISRSVDA-PSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.383e-30
Identity = 82/215 (38.14%), Postives = 104/215 (48.37%), Query Frame = 2
Query:   23 FLFLTLYLTLVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 664
            FL L ++    +AATF I NNC +TVW A +P GGG +L+  Q+  +NV  GT A RIW RT C F+  GRG C TGDC G L C   G P  TLAE+ +   Q  DF DIS IDGFN+ M+FS           C+  +  +C +                                       CPDAY +P D AT    C G +NY++ FCP
Sbjct:    9 FLLLAVFAAGASAATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQPA-TLAEYTIGGSQ--DFYDISVIDGFNLAMDFS-----------CSTGVALKCRD-------------------------------------ANCPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.360e-30
Identity = 83/215 (38.60%), Postives = 105/215 (48.84%), Query Frame = 2
Query:   23 FLFLTLYLTLVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 664
            FL L ++    +AATF I NNC +TVW A +P GGG +L+  Q+  +NV  GT A RIW RT C F+  GRG C TGDC G L C   G P  TLAE+ +   Q  DF DIS IDG+N+ M+FS  +G   +                                  C +SG              CPDAY +P D AT    C G +NY++ FCP
Sbjct:    9 FLLLAVFAAGASAATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQPA-TLAEYTIGGSQ--DFYDISVIDGYNLAMDFSCSTGVALK----------------------------------CRDSG--------------CPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.025e-30
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 2
Query:    8 LLNASFLFLTLYLTLVNAATFDIR--NNCPYTVWAAAVPGGGRR-LDRG----QNWPLNVNPGTKA---ARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYG-SPPNTLAEFALNQFQNLDF--IDISNIDGFNVPMEFSSVSG-GCNRVIRCTADIVGQCPNELRVPG--------GCNGPCPVFKTEEHCCNSG-----KCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFC 661
            LL  S LF  L L+      F +   NNCPYT+W A  P  G   L+RG     +      P   A    RIWART C +   G+  C TGDCGG ++C   G + P TLA+F L+   + DF    +S +DGFN+P+  +   G G   V+ C A+++  CP  L+           GC   C  FK++E CC +       C P+ +S+FFK  CP  ++Y  D  + +  C      KV+FC
Sbjct:    9 LLPLSLLFTLLSLSQSTNPNFILTLVNNCPYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNYQH-GKFYCATGDCGGRIECDGLGGAAPATLAQFVLHH-GHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFC 251          
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-30
Identity = 67/179 (37.43%), Postives = 92/179 (51.40%), Query Frame = 2
Query:  170 PGTKAARIWARTNCQFDGAGRGRCQTGDCG-GLLQCQAYGS-PPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSG-GCNRVIRCTADIVGQCPNELRVPGG------CNGPCPVFKTEEHCCNSGK-----CGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 664
            P   + R W RT C  D AG+  C+T DCG G + C   G+ PP TL E  +      D+ D+S +DGFN+PM  +   G G  +   C A++   CP +L+V         C   C  F   ++CC         C PT++S  F+++CP AYSY  DD  S FTC GG +Y + FCP
Sbjct:   34 PSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-30
Identity = 80/215 (37.21%), Postives = 103/215 (47.91%), Query Frame = 2
Query:   23 FLFLTLYLTLVNAATFDIRNNCPYTVWAAAVP-GGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEFALNQFQNLDFIDISNIDGFNVPMEFSSVSGGCNRVIRCTADIVGQCPNELRVPGGCNGPCPVFKTEEHCCNSGKCGPTKFSRFFKERCPDAYSYPKDDATSVFTCPGGTNYKVVFCP 664
            F  L ++    +AATF I NNC +TVW A +P GGG +L+  Q+  +NV  GT A RIW RT C F+  GRG C TGDC G L C   G P  TLAE+ +   Q  DF DIS IDG+N+ M+FS           C+  +  +C +                                       CPDAY +P D AT    C G +NY++ FCP
Sbjct:    9 FFLLAVFAAGASAATFRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQPA-TLAEYTIGGSQ--DFYDISVIDGYNLAMDFS-----------CSTGVALKCRD-------------------------------------ANCPDAYHHPNDVAT--HACNGNSNYQITFCP 169          
BLAST of CF836159 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 2
Query:    5 SLLNASFLFLTLYLTLVNAATFDIRNNCPYTVWAAAVPGGGRRLDRGQNWPLNVNPGTKAARIWARTNCQFDGAGRGRCQTGDCGGLLQCQAYGSPPNTLAEF 313
            + L A+ L ++ ++    A  FDI+N C YTVWAA +PGGG+RLD+GQ W +N+  GT +AR W RT C FD +G+G CQTGDCG  L C   G+ P TLAE+
Sbjct:    1 AFLLAATLTISSHMQEAGAVKFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
The following BLAST results are available for this feature:
BLAST of CF836159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TLP1_PRUPE7.335e-3235.06Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
RST1_AVESA1.383e-3038.14Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA2.360e-3038.60Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
OLP1_SOLLC4.025e-3034.69Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TP1B_MALDO8.967e-3037.43Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
RST2_AVESA8.967e-3037.21Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
PRR3_JUNVI3.189e-2751.46Pathogenesis-related protein (Fragment) OS=Juniper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836159 ID=CF836159; Name=CF836159; organism=Citrus sinensis; type=EST; length=742bp
ACGATCTTTATTAAATGCATCCTTCCTTTTTCTCACCCTATACTTAACTT
TGGTCAACGCAGCCACTTTCGATATCAGAAACAATTGCCCCTACACGGTC
TGGGCTGCAGCAGTGCCAGGCGGAGGCAGGAGACTCGACCGTGGCCAAAA
CTGGCCCCTTAATGTCAACCCCGGCACCAAGGCAGCCCGCATCTGGGCTA
GGACGAACTGCCAATTCGATGGAGCCGGGCGCGGGCGGTGCCAGACTGGT
GACTGTGGGGGACTACTCCAATGTCAAGCCTATGGCTCACCCCCCAACAC
CTTAGCTGAATTTGCACTAAACCAGTTCCAAAACTTGGATTTTATTGATA
TTTCGAACATTGATGGGTTTAATGTTCCTATGGAATTCAGTTCGGTGTCC
GGAGGATGCAACCGTGTGATTAGATGTACGGCTGATATTGTCGGGCAGTG
CCCGAATGAATTGAGGGTTCCCGGAGGATGTAATGGGCCATGTCCCGTGT
TCAAGACCGAAGAGCACTGTTGCAATTCAGGCAAATGTGGACCTACAAAA
TTCTCCAGGTTTTTCAAGGAAAGGTGCCCGGATGCTTATAGTTACCCTAA
AGATGATGCAACAAGCGTCTTCACTTGTCCTGGTGGGACTAATTATAAGG
TTGTGTTCTGCCCGTGAAGATTGAATCAGCTGCCTATCATTTGTTGGTTG
GAATTATCTGCTATACGTTGTAAGGTCGCTGCAATATATGTG
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