CF836161
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.643e-37 Identity = 85/200 (42.50%), Postives = 113/200 (56.50%), Query Frame = -2 Query: 205 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 798 +W A RGVDE ++ +LP LRR+I+ HLCL LVR+VP F MDD +L+ IC + S + T G I +EGDPV MLFV+RG ++SS + + L PG+F G+ELL+W L EAF L AED+K+V F+ +K++ + RYYS WR W A +Q AWRRYK R LS Sbjct: 411 KWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELS 609
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37 Identity = 84/193 (43.52%), Postives = 115/193 (59.59%), Query Frame = -2 Query: 226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798 +W RGVDE ++ NLP+ LRRDIK HLCL LVR+VPLF+ MDD +L+ IC R+K +FT+ + +EGDPV MLF++RG L+S + + + +L G F G+ELL+W L EAF L +E++K+V FR ++ V+ + R+YS WRTWAA IQ AWRRY R Sbjct: 460 KWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFRRLHSRQ-VQHTFRFYSHQWRTWAACFIQAAWRRYCKR 651
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35 Identity = 79/200 (39.50%), Postives = 116/200 (58.00%), Query Frame = -2 Query: 205 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 798 +W RGV+E ++ NLP+ LRRDIK H CLDL+++VPLF+ MD+ +L+ +CD++K +++T+ +EGDPV+ MLFV+RG L S+ + L P +F G++LL+W L EAF L A+D+K V FR K+ ++ + R+YS WRTW A IQ AWRR+ R SL+ Sbjct: 436 KWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQ-LQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLT 634
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 2.791e-35 Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = -2 Query: 208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798 RW RGV+E ++ NLP+ LRRDIK HLCLDL+++VPLF+ MD+ +L+ +CDR++ +++T+ + +EGDPV MLFV+RG L S+ + + L +F G++LL W L EAF L AED+K V FR K+ ++ + R+YS WRTW+ IQ AWRRY R SL Sbjct: 435 RWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQ-LQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAKSL 632
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.385e-34 Identity = 81/193 (41.97%), Postives = 107/193 (55.44%), Query Frame = -2 Query: 226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI--LHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798 +W RGVDE ++ LP LRR I+ HLCL LVR+VP F MDD +L+ IC+R+ + TK + +EGDPV MLF++RG ++SS + + L PG+F G+ELL+W L EAF L AED+K+V FR K K++ + RYYS WR W IQ AWRRY R Sbjct: 419 KWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFRRLHSK-KLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.585e-30 Identity = 74/193 (38.34%), Postives = 116/193 (60.10%), Query Frame = -2 Query: 226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798 +W +GV+E ++S+LP+ LR+DIK HLCL L+++VP FQ MDD +L+ +C R+K++++T+ I +EG+PV+ MLF++RG+L S+ + L G+F GD LL+W L P + E F L A+D+K+V +R K+ ++ R+YS W+TWAA IQ AW+R+ R Sbjct: 439 KWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYRRLHSKQ-LRHMFRFYSVQWQTWAACFIQAAWKRHCRR 628
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 4.466e-25 Identity = 69/199 (34.67%), Postives = 108/199 (54.27%), Query Frame = -2 Query: 214 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDD-LVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY-KHRLTLT 798 +W +G +E ++ +LP+ LR + K +L LD++++VP MDD +LE +CDRVKS+ + I +EG PV+ ML V RG L+S+ H +CC L G+ G+ L + R E F L +D+K++ H F ++K++R+ R YS WR+WAA IQ AWR++ K +L+ T Sbjct: 397 KWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLN-VFQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKRKLSKT 587
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 108.612 bits (270), Expect = 4.180e-23 Identity = 65/193 (33.68%), Postives = 108/193 (55.96%), Query Frame = -2 Query: 226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798 +W +G +E ++ +LP+ LR + K +L L L+++VPL Q MDD +L+ +C R+K++ +T+ I +EG+PV+ MLF++RG+L S+ + L G+ GD LL+W L + E F + A+D+K+V +R K+ ++ R+YS W+TWAA IQ AW+R+ R Sbjct: 397 KWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRTVQALTEVEGFVISADDLKFVATQYRRLHSKQ-LQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22 Identity = 67/202 (33.17%), Postives = 103/202 (50.99%), Query Frame = -2 Query: 223 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCL--------RRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 804 R WAA RGV+E + N+P+ L+RDI+ HL +++V +F MD+ VL++I +R+K + + + V++M+F+VRG ++S S L G+ G+ELL+WCL R + EAF L D++ VT F +V+ + RY SP WR AA+ IQ+AWR K +L Sbjct: 521 RYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESI----GEDGSVLPLSEGDVCGEELLTWCLSSINPDGTRIKMPPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQL 717
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21 Identity = 67/204 (32.84%), Postives = 102/204 (50.00%), Query Frame = -2 Query: 223 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIE----------RXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 804 R WAA RGV+E + N+P+ L+RDI+ HL +++V +F MD+ +L+ I +R+K + + G V++M+F+VRG ++S S L G+ G+ELL+WCL R + + EAF L D++ VT F +V+ + RY SP WR AA IQ+AWR + RL Sbjct: 554 RFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESI----GEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRL 752 The following BLAST results are available for this feature:
BLAST of CF836161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836161 ID=CF836161; Name=CF836161; organism=Citrus sinensis; type=EST; length=805bpback to top |