CF836161

Overview
NameCF836161
Unique NameCF836161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.643e-37
Identity = 85/200 (42.50%), Postives = 113/200 (56.50%), Query Frame = -2
Query:  205 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 798
            +W A RGVDE  ++ +LP  LRR+I+ HLCL LVR+VP F  MDD +L+ IC  + S + T G  I +EGDPV  MLFV+RG ++SS      +   +   L PG+F G+ELL+W L                     EAF L AED+K+V   F+     +K++ + RYYS  WR W A  +Q AWRRYK R     LS
Sbjct:  411 KWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNSTTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFVAHQFK-RLQSKKLQHAFRYYSHQWRAWGACFVQSAWRRYKRRKLAKELS 609          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37
Identity = 84/193 (43.52%), Postives = 115/193 (59.59%), Query Frame = -2
Query:  226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798
            +W   RGVDE  ++ NLP+ LRRDIK HLCL LVR+VPLF+ MDD +L+ IC R+K  +FT+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G F G+ELL+W L                     EAF L +E++K+V   FR    ++ V+ + R+YS  WRTWAA  IQ AWRRY  R
Sbjct:  460 KWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFVASQFRRLHSRQ-VQHTFRFYSHQWRTWAACFIQAAWRRYCKR 651          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35
Identity = 79/200 (39.50%), Postives = 116/200 (58.00%), Query Frame = -2
Query:  205 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLS 798
            +W   RGV+E  ++ NLP+ LRRDIK H CLDL+++VPLF+ MD+ +L+ +CD++K +++T+     +EGDPV+ MLFV+RG L S+          +   L P +F G++LL+W L                     EAF L A+D+K V   FR    K+ ++ + R+YS  WRTW A  IQ AWRR+  R    SL+
Sbjct:  436 KWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQ-LQHTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLT 634          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.791e-35
Identity = 81/199 (40.70%), Postives = 115/199 (57.79%), Query Frame = -2
Query:  208 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSL 798
            RW   RGV+E  ++ NLP+ LRRDIK HLCLDL+++VPLF+ MD+ +L+ +CDR++ +++T+   + +EGDPV  MLFV+RG L S+      +   +   L   +F G++LL W L                     EAF L AED+K V   FR    K+ ++ + R+YS  WRTW+   IQ AWRRY  R    SL
Sbjct:  435 RWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQ-LQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAKSL 632          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.385e-34
Identity = 81/193 (41.97%), Postives = 107/193 (55.44%), Query Frame = -2
Query:  226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQI--LHNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798
            +W   RGVDE  ++  LP  LRR I+ HLCL LVR+VP F  MDD +L+ IC+R+   + TK   + +EGDPV  MLF++RG ++SS      +   +   L PG+F G+ELL+W L                     EAF L AED+K+V   FR    K K++ + RYYS  WR W    IQ AWRRY  R
Sbjct:  419 KWLTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFRRLHSK-KLQHAFRYYSHQWRAWGTCFIQAAWRRYMKR 610          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.585e-30
Identity = 74/193 (38.34%), Postives = 116/193 (60.10%), Query Frame = -2
Query:  226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798
            +W   +GV+E  ++S+LP+ LR+DIK HLCL L+++VP FQ MDD +L+ +C R+K++++T+   I +EG+PV+ MLF++RG+L S+          +   L  G+F GD LL+W L  P   +              E F L A+D+K+V   +R    K+ ++   R+YS  W+TWAA  IQ AW+R+  R
Sbjct:  439 KWQETKGVEEEALLSSLPKDLRKDIKRHLCLKLLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLVAGDFCGD-LLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFVATQYRRLHSKQ-LRHMFRFYSVQWQTWAACFIQAAWKRHCRR 628          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.466e-25
Identity = 69/199 (34.67%), Postives = 108/199 (54.27%), Query Frame = -2
Query:  214 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDD-LVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNN--IKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRY-KHRLTLT 798
            +W   +G +E  ++ +LP+ LR + K +L LD++++VP    MDD  +LE +CDRVKS+ +     I +EG PV+ ML V RG L+S+   H      +CC L  G+  G+ L +         R              E F L  +D+K++  H    F ++K++R+ R YS  WR+WAA  IQ AWR++ K +L+ T
Sbjct:  397 KWRETKGTEEEALLRSLPKDLRLETKRYLYLDMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLKSTTGSHEMGVRNNCCDLQDGDICGELLFNG-------SRLPTSTRTVMTLTEVEGFILLPDDIKFIASHLN-VFQRQKLQRTFRLYSQQWRSWAAFFIQAAWRKHCKRKLSKT 587          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.180e-23
Identity = 65/193 (33.68%), Postives = 108/193 (55.96%), Query Frame = -2
Query:  226 RWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCLRRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHR 798
            +W   +G +E  ++ +LP+ LR + K +L L L+++VPL Q MDD +L+ +C R+K++ +T+   I +EG+PV+ MLF++RG+L S+          +   L  G+  GD LL+W L      +              E F + A+D+K+V   +R    K+ ++   R+YS  W+TWAA  IQ AW+R+  R
Sbjct:  397 KWRRTKGTEEEALLRSLPKDLRLETKRYLFLKLLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNSVDLIAGDSCGD-LLTWAL-YSLSSQFPISSRTVQALTEVEGFVISADDLKFVATQYRRLHSKQ-LQHMFRFYSLQWQTWAACFIQAAWKRHCRR 586          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 67/202 (33.17%), Postives = 103/202 (50.99%), Query Frame = -2
Query:  223 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCL--------RRPFIERXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 804
            R  WAA RGV+E  +  N+P+ L+RDI+ HL    +++V +F  MD+ VL++I +R+K   + +   +      V++M+F+VRG ++S         S   L  G+  G+ELL+WCL        R     +              EAF L   D++ VT  F       +V+ + RY SP WR  AA+ IQ+AWR  K +L
Sbjct:  521 RYTWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHRGLVEKMVFIVRGEMESI----GEDGSVLPLSEGDVCGEELLTWCLSSINPDGTRIKMPPKGLVSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVAWRYRKRQL 717          
BLAST of CF836161 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 67/204 (32.84%), Postives = 102/204 (50.00%), Query Frame = -2
Query:  223 RQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRPFIE----------RXXXXXXXXXXXXXXEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRL 804
            R  WAA RGV+E  +  N+P+ L+RDI+ HL    +++V +F  MD+ +L+ I +R+K   +     +   G  V++M+F+VRG ++S         S   L  G+  G+ELL+WCL R  +           +              EAF L   D++ VT  F       +V+ + RY SP WR  AA  IQ+AWR  + RL
Sbjct:  554 RFNWAATRGVNEELLFENMPDDLQRDIRRHL-FKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESI----GEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRL 752          
The following BLAST results are available for this feature:
BLAST of CF836161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNG18_ARATH6.643e-3742.50Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNGC5_ARATH8.675e-3743.52Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG13_ARATH1.636e-3539.50Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNG10_ARATH2.791e-3540.70Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG16_ARATH1.385e-3441.97Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNGC3_ARATH1.585e-3038.34Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG12_ARATH4.466e-2534.67Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNG11_ARATH4.180e-2333.68Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG19_ARATH7.883e-2233.17Putative cyclic nucleotide-gated ion channel 19 OS... [more]
CNG20_ARATH1.756e-2132.84Probable cyclic nucleotide-gated ion channel 20, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836161 ID=CF836161; Name=CF836161; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTAGCCGTATCTTGGTAACTCTTCCTCCGAATAAAATATGTTC
CAGCTACAAAGTTCTTCCATACGTCCTCCAACAAATTTCAGAAATCAAAA
TCATCTTGGTTAGGTTTCGGAGAAGTTAACAAAGCCGTATAAAGCCTGAG
CCTGTCCTCCCCCAACGACGAACACCGGGACAAAGGCCTTCTCGGACGTA
TAAACGACAGCGAAGTGAGTGTCAACCGGTGCTTGTACCTTCTCCAAGCA
AGCTGAATAGCCACAGCTGCCCAAGTTCTCCATCCTGGAGAATAGTACCT
GGCACTTCTCTTCACTTTCTCCTTAACAAACGTGTACCTGAAATGTTGTG
TCACATATTTCACATCTTCGGCTTCCAGGCCAAATGCCTCTGTTGTTTCC
AGGGTTATTAAAGTAGATGAAGATGGCGGTAGCCTTTCGATGAAGGGTCT
CCGAAGGCACCAGGATAGAAGCTCATCGCCACTGAAGTTTCCAGGGCCCA
ACATGCAGCAACTTTTGATGTTGTTGTGGAGAATTTGGCTGCTTTGAAGA
TGCCCTCTTACTACAAATAGCATTCTTTGTACTGGGTCACCCTCTTTTGT
TATCACTTCACCCTTTGTAAATATGAGAGACTTCACTCGATCACAAATAT
TCTCCAAAACCAAATCATCCATATGTTGGAACAATGGTACCTGTCTTACT
AAGTCCAAGCAGAGATGATACTTGATGTCCCTTCTTAAGCCCTCAGGGAG
GTTACTGATCATCTCACACTCATCAACACCGCGCATTGCCGCCCATCGCT
GCCGC
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