CF836162

Overview
NameCF836162
Unique NameCF836162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPNG (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus niger GN=cypC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.410e-22
Identity = 61/140 (43.57%), Postives = 78/140 (55.71%), Query Frame = -1
Query:   67 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS 483
            G   +EL+    P+T +NF  L   ++G        +Y    FHR+IP FM Q             SIYG KF DE N   KHTG GILSMAN+GP  NGSQFF+  A   WLDGKH +FG+V  GM V++ +  V ++S
Sbjct:   12 GSFTVELYNAHAPKTCKNFATLA--QRG--------YYNNVIFHRIIPNFMVQTGDPTGTGRGG-SSIYGEKFEDEINPNLKHTGAGILSMANSGPNNNGSQFFITLAPQPWLDGKHTIFGRVKSGMRVIQRMGLVKTNS 140          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 66/164 (40.24%), Postives = 90/164 (54.88%), Query Frame = -1
Query:   46 PNPK-VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 531
            P+P  V FD +VG        +EL+    P+T  NF  L   E+G        +Y G  FHR+IP FM Q             SIYG +FADE   + +  G GIL+MAN+GP TNGSQFF+  A T +LDGKH +FG+V  GM  ++ +E V   + + ++PV
Sbjct:    4 PSPTYVTFDTSVGS-----FTVELYTAHAPKTCNNFAKLA--ERG--------YYNGVIFHRIIPNFMIQGGDPTGTGRGGT-SIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAV--RTDKDDRPV 149          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.921e-22
Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = -1
Query:   49 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 525
            PK   D  +     G I ++LF    P+T ENF   C   +         +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  485 PKRVSDSAIIHTSMGDIHIKLFPVECPKTVENF---CVHSRNG-------YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 632          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.692e-21
Identity = 65/160 (40.62%), Postives = 84/160 (52.50%), Query Frame = -1
Query:   49 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 525
            PK   D  +     G I  +LF    P+T ENF   C   +         +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  487 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNG-------YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.692e-21
Identity = 65/160 (40.62%), Postives = 84/160 (52.50%), Query Frame = -1
Query:   49 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 525
            PK   D  +     G I  +LF    P+T ENF   C   +         +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  487 PKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNG-------YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 634          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.887e-21
Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = -1
Query:   46 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 483
            G I +EL+ +  P+  +NF  L           K  +Y  + FHR+I  FM Q            ESIYG KF DE   + KHTG GILSMAN+G  +NGSQFF+    T WLDGKH +FG+V  GM   K ++K+ +     +KP+
Sbjct:   13 GDITLELYYNHAPKACKNFYEL----------SKRGYYDNTIFHRLIKDFMIQGGDPLGNGRGG-ESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGM---KVVQKMNAMQTNNDKPI 145          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 65/160 (40.62%), Postives = 85/160 (53.12%), Query Frame = -1
Query:   49 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 525
            PK   D  +     G I ++LF    P+T ENF   C   +         +Y G +FHR+I GFM Q            ESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  487 PKRVSDSAIVHTSMGDIHIKLFPVECPKTVENF---CVHSRNG-------YYNGHTFHRIIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNV-KVNPQTDKP 634          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.924e-21
Identity = 64/142 (45.07%), Postives = 81/142 (57.04%), Query Frame = -1
Query:   79 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXG-----ESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKV 483
            G I +E+F +  P+TAENF ALC        SG   +Y  ++FHR IPGFM Q           G      SI+G KF DE     KH   GI+SMAN+GP TNGSQFF+  AK   LD K+ VFG+V++G D  +  +EKV
Sbjct:   10 GDIKIEVFCEAVPKTAENFLALCA-------SG---YYDNNTFHRNIPGFMIQVHEHLHTGDPTGTGKGGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLDMMEKV 141          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPIL3_CHICK (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.431e-21
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = -1
Query:   79 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 483
            G I +ELF + TP+T ENF ALC             +Y G  FHR I GFM Q             SI+G KF DE +   KH+  G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   10 GDIKIELFCERTPKTCENFLALCASN----------YYNGCVFHRNIKGFMVQTGDPLGTGKGGT-SIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of CF836162 vs. ExPASy Swiss-Prot
Match: PPIL3_RAT (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.433e-20
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = -1
Query:   79 GRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 483
            G I +E+F + TP+T ENF ALC             +Y G  FHR I GFM Q             SI+G KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   10 GDIKIEVFCERTPKTCENFLALCASN----------YYNGCVFHRNIKGFMVQTGDPTGTGRGG-SSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
The following BLAST results are available for this feature:
BLAST of CF836162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPIL1_ASPNG3.410e-2243.57Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
PPIL1_CRYNE5.816e-2240.24Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
PPWD1_BOVIN9.921e-2240.63Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_PONAB1.692e-2140.63Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN1.692e-2140.63Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYPE_DICDI2.887e-2140.82Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
PPWD1_MOUSE3.770e-2140.63Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL3_RHIOR4.924e-2145.07Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]
PPIL3_CHICK6.431e-2142.65Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gall... [more]
PPIL3_RAT1.433e-2041.91Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836162 ID=CF836162; Name=CF836162; organism=Citrus sinensis; type=EST; length=588bp
TTATCATGATCAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGG
GCTTGTTGGTCCTGCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACG
ACGTCCATCCCTTCGACGACCTGACCGAACACAACGTGCTTCCCATCGAG
CCACTCGGTCTTGGCCGTACAGACGAAGAACTGAGATCCGTTGGTTCCGG
GTCCGGCATTCGCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACG
AAGTTCTCATCGGCGAATTTCGAGCCGTAGATTGATTCGCCTCCGGTTCC
GTTTCCGGCGGTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACAC
GGTGGAAGGACGAGCCTTTGTAGTGGAGAGGCTTGCCGGACTTGCCGACG
CCTTTCTCGCCGGTGCAGAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGT
GACATCGGCGAAGAGCTCCATCACGATCCTGCCGGCCGGCTGACCGCCGA
CGGTCATGTCGAAGAACACTTTGGGGTTTGGCATTTTTGATTGGTTGATT
GGAGAGAAAAAAACAAACTAAACACGGACTTCTGATTT
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