CF836175

Overview
NameCF836175
Unique NameCF836175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2774 contig Csv1_Contig2774:1152..1967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836175 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.760e-20
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2
Query:  137 PPGFRFYPTDEELLVQYLCRKVAGQHFSL--QIIGEIDLYKFDPWVLPSKAIFGEKE--WYFFSPRDRKYPNGSRPNRVAGSGYWKATG-TDKIITTEG--RKVGIKKALVFYVGKAPKGTKTNWIMHEYRLFEPSRKNGSSKLDDWVLCRIYKKHSGSQKPVSATS 616
            P GFRF P DEE++  YL  K      S   ++I  +D+  F+PW LPSK++   ++  WYFFS ++ KY  G +  R   SG+WK TG T  ++   G   K+G K+ LVF   K   G+KT+W+MHEY     +     +++  + +C++  +  G +  +S++S
Sbjct:    4 PVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVF---KNRDGSKTDWVMHEYH----ATSLFPNQMMTYTVCKV--EFKGEETEISSSS 161          
BLAST of CF836175 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 55/167 (32.93%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  128 LNLPPGFRFYPTDEELLVQYLCRKVAGQHFSL--QIIGEIDLYKFDPWVLPSKAIFGEKE--WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLFEPSRKNGSSKLDDWVLCRIYKKHSGSQKPVSATS 616
            +  P G RF PTDEE++V YL  K + +  S   + I  + + + DPW LP ++    K+  W FF P++ KY  G +  R   SG+WK+TG  K I    +++G KK L+FY  K    +K++W++HEY  F     + +  +  + LC++       +K  S+ S
Sbjct:    1 METPVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFYTSKE---SKSDWVIHEYHGF-----SHNQMMMTYTLCKVMFNGGMREKSSSSPS 159          
BLAST of CF836175 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.161e-18
Identity = 58/167 (34.73%), Postives = 88/167 (52.69%), Query Frame = 2
Query:  137 PPGFRFYPTDEELLVQYLCRKVAGQHFSL--QIIGEIDLYKFDPWVLPSKAIFGEKE--WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII---TTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLFEPSRKNGSSKLDDWVLCRIYKKHSGSQKPVSATS 616
            P GFRF PTD E++  YL  K    + S   ++I  +D+  FDPW LPS +    ++  WYFF  ++ KY  G R  R   SG+WK TG    I   T +  K+G K+ LVF   K   G+K++W MHEY     +  +  +++  + LC++  K  G ++  S  +
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEYH----ATFSSPNQIMTYTLCKV--KFKGERREFSVAT 161          
BLAST of CF836175 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 48/133 (36.09%), Postives = 75/133 (56.39%), Query Frame = 2
Query:  143 GFRFYPTDEELLVQYLCRKVAGQHF-SLQI-IGEIDLYKFDPWVLPSKAIFGEKE--WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII------TTEG--RKVGIKKALVFYVGKAPKGTKTNWIMHEY 505
            GF F P DEEL+  YL  K+ G     +++ I E+++  +DPW L  ++ +  ++  WYFFS R+     G+R +R   SG WK TG    +       +EG   K+G K+ LVF  G+ P  TK++W++HE+
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEF 136          
The following BLAST results are available for this feature:
BLAST of CF836175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC4_ARATH5.760e-2034.73NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
NAC3_ARATH2.189e-1932.93NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC5_ARATH3.161e-1834.73NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC1_ARATH1.243e-1436.09NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02I18_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836175 ID=CF836175; Name=CF836175; organism=Citrus sinensis; type=EST; length=816bp
CCAATTTCCATTTCTCCCTCTGCTTGTCCCCATAGCTTTAGCTCAGCATC
TTCATCTATATCTTTTATTCGCAATTCATTTGAAAGCTTGAAAAATGGGC
GTACCGGAGACCGACCCGCTCTCACAATTGAACTTACCTCCGGGTTTTCG
GTTTTACCCGACTGATGAGGAACTTCTAGTTCAATATCTCTGTCGCAAAG
TTGCAGGGCAACATTTTTCGCTGCAAATTATCGGTGAAATAGATTTGTAC
AAGTTTGACCCATGGGTTCTACCAAGCAAGGCAATTTTTGGTGAGAAAGA
ATGGTACTTTTTCAGCCCCAGGGATAGAAAATATCCAAACGGGTCCCGAC
CCAACAGAGTAGCCGGGTCCGGGTATTGGAAGGCCACAGGCACCGACAAG
ATTATCACAACTGAAGGTCGTAAGGTTGGTATCAAAAAGGCTCTTGTTTT
TTACGTAGGCAAAGCTCCAAAAGGCACCAAAACCAATTGGATCATGCACG
AATATCGACTCTTTGAACCTTCTCGCAAAAATGGCAGCTCCAAGTTAGAT
GATTGGGTTCTGTGCAGAATCTATAAGAAGCATTCAGGTTCCCAAAAACC
AGTGTCAGCAACAAGTGTTTCTTCAAGCAAAGAACACAGTAATGGTTCTT
GTTCATCTTCATCTTCTCATCTTGATGATGTGCTCGAGTCTTTACCTGAA
ATTGATGACCGATTTTTCGCTTTGCCGCGCATGAACTCACTCAAGACTTT
ACAGCAAGAAGACAACAAAGGTTACAATTTGCAGCATCTGGGGTCGGGTA
ATTTTGACTGGGCGAG
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