CF836186
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_XENTR (40S ribosomal protein SA OS=Xenopus tropicalis GN=rpsa PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33 Identity = 79/167 (47.31%), Postives = 99/167 (59.28%), Query Frame = -1 Query: 326 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTS-GDQWPSQIAD------GGWAGGEVQKPIPGVPYF----PEAPAA 793 Q +F EPRLL+ TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR + A AE T +W + +A+ W+ G VQ P + F PE PAA Sbjct: 113 QAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKATTKEEYQGEWTAPVAEFPQAEVADWSEG-VQVPSVPIQQFPAERPEIPAA 270
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_SOLSE (40S ribosomal protein SA OS=Solea senegalensis GN=rpsa PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLL+ TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H WDVM DL+FYR Sbjct: 113 QAAFREPRLLLVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWDVMPDLYFYR 205
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_XENLA (40S ribosomal protein SA OS=Xenopus laevis GN=rpsa PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.401e-33 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLL+ TDPR DHQPI EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR Sbjct: 113 QAAFREPRLLVVTDPRADHQPITEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLLI TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR Sbjct: 113 QAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_ICTPU (40S ribosomal protein SA OS=Ictalurus punctatus GN=rpsa PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLLI TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR Sbjct: 113 QAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DIACI (40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33 Identity = 84/180 (46.67%), Postives = 98/180 (54.44%), Query Frame = -1 Query: 299 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR--------XXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPS-QIADGGWAGGEVQKPIPGVPYFPEAPAA------TVPLGGDGW 793 Q +F EPRLL+ TDP TDHQPI EAA NIP IAFC+T+SP+R+VDI IP NNK HSIG ++WLLAR VL+ RGTI KWDV+VDLFFYR D A T + PS +A WA E IP P+A AA T P+G D W Sbjct: 113 QAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTVVPSADLAPQSWA--EESASIPQYAPAPQAAAAPVADDWTTPVGADDW 290
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DANRE (40S ribosomal protein SA OS=Danio rerio GN=rpsa PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33 Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLLI TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR Sbjct: 113 QAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_TAEGU (40S ribosomal protein SA OS=Taeniopygia guttata GN=RPSA PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32 Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLL+ TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR Sbjct: 113 QAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PINFU (40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32 Identity = 72/159 (45.28%), Postives = 89/159 (55.97%), Query Frame = -1 Query: 341 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQW--------PSQIADGGWAGGEVQKPIPGVPYFP 793 Q +F EPRLL+ TDPR DHQP+ EA+ NIP IA C+TDSP+RYVD+ IP NNK HS+G ++WLLAR VL++RGTI H W+VMVDL+FYR + E DQW P Q WA + PG P+ P Sbjct: 113 QAAFREPRLLVVTDPRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLRGTISRDHPWEVMVDLYFYRDPEEAEKEEQTVVEKPAVKSDEVQ------DQWATTDIAIQPPQQEVSDWAAESIPVAPPGQPFMP 265
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_CHICK (40S ribosomal protein SA OS=Gallus gallus GN=RPSA PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32 Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = -1 Query: 515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793 Q +F EPRLL+ TDPR DHQP+ EA+ NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI H W+VM DL+FYR Sbjct: 113 QAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205 The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bpback to top |