CF836186

Overview
NameCF836186
Unique NameCF836186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836186_ssr479 microsatellite CF836186_ssr479:479..490. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:429..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_XENTR (40S ribosomal protein SA OS=Xenopus tropicalis GN=rpsa PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33
Identity = 79/167 (47.31%), Postives = 99/167 (59.28%), Query Frame = -1
Query:  326 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTS-GDQWPSQIAD------GGWAGGEVQKPIPGVPYF----PEAPAA 793
            Q +F EPRLL+ TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR                + A AE  T       +W + +A+        W+ G VQ P   +  F    PE PAA
Sbjct:  113 QAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKE--------EQAAAEKATTKEEYQGEWTAPVAEFPQAEVADWSEG-VQVPSVPIQQFPAERPEIPAA 270          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_SOLSE (40S ribosomal protein SA OS=Solea senegalensis GN=rpsa PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H WDVM DL+FYR
Sbjct:  113 QAAFREPRLLLVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWDVMPDLYFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_XENLA (40S ribosomal protein SA OS=Xenopus laevis GN=rpsa PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.401e-33
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDPR DHQPI EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  113 QAAFREPRLLVVTDPRADHQPITEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLLI TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  113 QAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_ICTPU (40S ribosomal protein SA OS=Ictalurus punctatus GN=rpsa PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLLI TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  113 QAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DIACI (40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 84/180 (46.67%), Postives = 98/180 (54.44%), Query Frame = -1
Query:  299 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR--------XXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPS-QIADGGWAGGEVQKPIPGVPYFPEAPAA------TVPLGGDGW 793
            Q +F EPRLL+ TDP TDHQPI EAA  NIP IAFC+T+SP+R+VDI IP NNK  HSIG ++WLLAR VL+ RGTI    KWDV+VDLFFYR                        D   A   T   +    PS  +A   WA  E    IP     P+A AA      T P+G D W
Sbjct:  113 QAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYRDPEEAEKEEQAGKESAAAIADKPADEFAAHAPTESWNDTVVPSADLAPQSWA--EESASIPQYAPAPQAAAAPVADDWTTPVGADDW 290          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DANRE (40S ribosomal protein SA OS=Danio rerio GN=rpsa PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.666e-33
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLLI TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  113 QAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGPHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_TAEGU (40S ribosomal protein SA OS=Taeniopygia guttata GN=RPSA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  113 QAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PINFU (40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32
Identity = 72/159 (45.28%), Postives = 89/159 (55.97%), Query Frame = -1
Query:  341 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQW--------PSQIADGGWAGGEVQKPIPGVPYFP 793
            Q +F EPRLL+ TDPR DHQP+ EA+  NIP IA C+TDSP+RYVD+ IP NNK  HS+G ++WLLAR VL++RGTI   H W+VMVDL+FYR                   + E        DQW        P Q     WA   +    PG P+ P
Sbjct:  113 QAAFREPRLLVVTDPRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLRGTISRDHPWEVMVDLYFYRDPEEAEKEEQTVVEKPAVKSDEVQ------DQWATTDIAIQPPQQEVSDWAAESIPVAPPGQPFMP 265          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_CHICK (40S ribosomal protein SA OS=Gallus gallus GN=RPSA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.262e-32
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  113 QAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RSSA_XENTR5.667e-3347.3140S ribosomal protein SA OS=Xenopus tropicalis GN=... [more]
RSSA_SOLSE5.667e-3367.7440S ribosomal protein SA OS=Solea senegalensis GN=... [more]
RSSA_XENLA7.401e-3367.7440S ribosomal protein SA OS=Xenopus laevis GN=rpsa... [more]
RSSA_SPAAU9.666e-3367.7440S ribosomal protein SA OS=Sparus aurata GN=rpsa ... [more]
RSSA_ICTPU9.666e-3367.7440S ribosomal protein SA OS=Ictalurus punctatus GN... [more]
RSSA_DIACI9.666e-3346.6740S ribosomal protein SA OS=Diaphorina citri PE=2 ... [more]
RSSA_DANRE9.666e-3367.7440S ribosomal protein SA OS=Danio rerio GN=rpsa PE... [more]
RSSA_TAEGU1.262e-3266.6740S ribosomal protein SA OS=Taeniopygia guttata GN... [more]
RSSA_PINFU1.262e-3245.2840S ribosomal protein SA OS=Pinctada fucata PE=2 S... [more]
RSSA_CHICK1.262e-3266.6740S ribosomal protein SA OS=Gallus gallus GN=RPSA ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bp
TTAACTACCAAAATATTAGGTACCATCATCACCCTTTAAAAAACCTAATT
CTCAATGTCTAGAACTATAACTGCTTCAAAAAAAAAAAGAAAAAAGCCAT
AGTTCTTTGCAGAACATAAAGAAGTTCAAACTAACACATAGTTGTACCCC
AAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAAATTAGTCC
CATCCAGTAGGTGGTGGGGCAGCAGAAACATCAGGAGCTGTAACTGCTGC
CATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACTGCATCCC
ATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGGGAAATAG
GGAACACCAGGAATGGGCTTCTGAACTTCACCACCCGCCCACCCACCATC
AGCAATTTGGGAAGGCCATTGATCACCACTGGTAAGATTCGTGTTGTACT
CTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGCCTGCTTG
GTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACATCCCACTT
GTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTAGCCAAAA
GCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGCAGGAATG
CCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGGCAATGGT
GGGAATGTTTCCAAGGGCAGCTTCCTTAATTGGCTGATGGTCTGTTCGTG
GATCTGTTANAATGAGAAGTCGGGGCTCATTGAATGATGTTTG
back to top