CF836186

Overview
NameCF836186
Unique NameCF836186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836186_ssr479 microsatellite CF836186_ssr479:479..490. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:429..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RS2_METVS (30S ribosomal protein S2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps2p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = -1 
Query:  563 FNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 784
            F EP ++  +DPR D Q +KEA    IP ++ CDT+    ++D  IP NNKG+ S+  +++L+AR  L+ RG I
Sbjct:  110 FAEPEVMFLSDPRVDKQALKEAIEIGIPIVSMCDTEHLTAHLDFIIPTNNKGRKSVSLMYFLIAREYLKNRGII 183
[Close]
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RS2_HALMA (30S ribosomal protein S2P OS=Haloarcula marismortui GN=rps2p PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = -1 
Query:  569 EPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 778
            EP +++ TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:  184 EPDIVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVVYWLLANETLDRRG 253
The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RS2_METVS6.097e-1141.8930S ribosomal protein S2P OS=Methanococcus vanniel... [more]
RS2_HALMA7.963e-1142.8630S ribosomal protein S2P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bp
TTAACTACCAAAATATTAGGTACCATCATCACCCTTTAAAAAACCTAATT
CTCAATGTCTAGAACTATAACTGCTTCAAAAAAAAAAAGAAAAAAGCCAT
AGTTCTTTGCAGAACATAAAGAAGTTCAAACTAACACATAGTTGTACCCC
AAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAAATTAGTCC
CATCCAGTAGGTGGTGGGGCAGCAGAAACATCAGGAGCTGTAACTGCTGC
CATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACTGCATCCC
ATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGGGAAATAG
GGAACACCAGGAATGGGCTTCTGAACTTCACCACCCGCCCACCCACCATC
AGCAATTTGGGAAGGCCATTGATCACCACTGGTAAGATTCGTGTTGTACT
CTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGCCTGCTTG
GTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACATCCCACTT
GTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTAGCCAAAA
GCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGCAGGAATG
CCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGGCAATGGT
GGGAATGTTTCCAAGGGCAGCTTCCTTAATTGGCTGATGGTCTGTTCGTG
GATCTGTTANAATGAGAAGTCGGGGCTCATTGAATGATGTTTG
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