CF836186

Overview
NameCF836186
Unique NameCF836186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROYA (40S ribosomal protein SA OS=Drosophila yakuba GN=sta PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROTE (40S ribosomal protein SA OS=Drosophila teissieri GN=sta PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROSI (40S ribosomal protein SA OS=Drosophila simulans GN=sta PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROSE (40S ribosomal protein SA OS=Drosophila sechellia GN=sta PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROME (40S ribosomal protein SA OS=Drosophila melanogaster GN=sta PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  156 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 248          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROER (40S ribosomal protein SA OS=Drosophila erecta GN=sta PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROAN (40S ribosomal protein SA OS=Drosophila ananassae GN=sta PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.632e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_TRIAD (40S ribosomal protein SA OS=Trichoplax adhaerens GN=TRIADDRAFT_49917 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q ++ EPRLLI TDPR DHQPI EA+  NIP IAFC+TDS +RY+D+GIP NNKG H+IG ++WLLAR VL++RGTI     W+ M DLFFYR
Sbjct:  113 QKAYREPRLLIVTDPRVDHQPITEASYVNIPVIAFCNTDSRLRYIDVGIPCNNKGAHAIGLMWWLLAREVLRLRGTISRDTDWEHMPDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_MAGGR (40S ribosomal protein S0 OS=Magnaporthe grisea GN=RPS0 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 787
            SF EPRL++ TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMVDL+FYR
Sbjct:  117 SFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGCIWWMLAREVLRLRGTIYNRETPWDVMVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.438e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+ TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:  113 QPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRSIEWPVVVDLFFYR 205          
The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RSSA_DROYA2.632e-3065.5940S ribosomal protein SA OS=Drosophila yakuba GN=s... [more]
RSSA_DROTE2.632e-3065.5940S ribosomal protein SA OS=Drosophila teissieri G... [more]
RSSA_DROSI2.632e-3065.5940S ribosomal protein SA OS=Drosophila simulans GN... [more]
RSSA_DROSE2.632e-3065.5940S ribosomal protein SA OS=Drosophila sechellia G... [more]
RSSA_DROME2.632e-3065.5940S ribosomal protein SA OS=Drosophila melanogaste... [more]
RSSA_DROER2.632e-3065.5940S ribosomal protein SA OS=Drosophila erecta GN=s... [more]
RSSA_DROAN2.632e-3065.5940S ribosomal protein SA OS=Drosophila ananassae G... [more]
RSSA_TRIAD3.438e-3064.5240S ribosomal protein SA OS=Trichoplax adhaerens G... [more]
RSSA_MAGGR3.438e-3066.3040S ribosomal protein S0 OS=Magnaporthe grisea GN=... [more]
RSSA_DROWI3.438e-3065.5940S ribosomal protein SA OS=Drosophila willistoni ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bp
TTAACTACCAAAATATTAGGTACCATCATCACCCTTTAAAAAACCTAATT
CTCAATGTCTAGAACTATAACTGCTTCAAAAAAAAAAAGAAAAAAGCCAT
AGTTCTTTGCAGAACATAAAGAAGTTCAAACTAACACATAGTTGTACCCC
AAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAAATTAGTCC
CATCCAGTAGGTGGTGGGGCAGCAGAAACATCAGGAGCTGTAACTGCTGC
CATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACTGCATCCC
ATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGGGAAATAG
GGAACACCAGGAATGGGCTTCTGAACTTCACCACCCGCCCACCCACCATC
AGCAATTTGGGAAGGCCATTGATCACCACTGGTAAGATTCGTGTTGTACT
CTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGCCTGCTTG
GTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACATCCCACTT
GTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTAGCCAAAA
GCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGCAGGAATG
CCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGGCAATGGT
GGGAATGTTTCCAAGGGCAGCTTCCTTAATTGGCTGATGGTCTGTTCGTG
GATCTGTTANAATGAGAAGTCGGGGCTCATTGAATGATGTTTG
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