CF836186

Overview
NameCF836186
Unique NameCF836186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836186_ssr479 microsatellite CF836186_ssr479:479..490. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:429..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFU (40S ribosomal protein S0 OS=Aspergillus fumigatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.484e-29
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = -1
Query:  317 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVP 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR                    AE N  +    + P     G    G V+    G  +  +AP A VP
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFYRD-----------------PEAEENKEIADEAKVPGAEEIG---AGAVESGFAGENWDTQAPGAGVP 254          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFC (40S ribosomal protein S0 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps0 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.484e-29
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = -1
Query:  317 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVP 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR                    AE N  +    + P     G    G V+    G  +  +AP A VP
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFYRD-----------------PEAEENKEIADEAKVPGAEEIG---AGAVESGFAGENWDTQAPGAGVP 254          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_AEDAE (40S ribosomal protein SA OS=Aedes aegypti GN=AAEL008083 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.484e-29
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLLI TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP NNK  HSIG ++WLLAR VL++RG I    KWD+  DLFFYR
Sbjct:  113 QPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNNKSPHSIGLMWWLLAREVLRLRGKI-THDKWDIKPDLFFYR 204          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PNECA (40S ribosomal protein S0 OS=Pneumocystis carinii GN=RPS0 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.468e-29
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 787
            S+ EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP++YVD+ IP NNKG+HSIG ++W+LAR VL++RGT+     +W +MVDL+FYR
Sbjct:  113 SYKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPLQYVDVAIPTNNKGRHSIGLIWWMLAREVLRLRGTLANRDVEWGIMVDLYFYR 204          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_CHAGB (40S ribosomal protein S0 OS=Chaetomium globosum GN=RPS0 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.468e-29
Identity = 61/92 (66.30%), Postives = 71/92 (77.17%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+HSIG ++W+LAR VL++RGTI      WDVM DL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTIYNRETPWDVMPDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_ORNPR (40S ribosomal protein SA OS=Ornithodoros parkeri PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.106e-28
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLL+  DPR DHQP+ EA+  NIP IAFC+TD+ +RYVD+ IP NNK +HSIG ++W+L R VL+MRG+I     WD MVDLFFYR
Sbjct:  113 QAAFREPRLLVVCDPREDHQPVTEASYVNIPVIAFCNTDACLRYVDVAIPCNNKAQHSIGLMWWMLTREVLRMRGSIIREIPWDTMVDLFFYR 205          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_COPC7 (40S ribosomal protein S0 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.106e-28
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 787
            SF EPR++I TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR
Sbjct:  116 SFKEPRIIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLQFVDVAIPTNNKTRHSIGLIWWLLAREVLRLRGTIPRTPDGWNVMVDMFFYR 207          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_TALSN (40S ribosomal protein S0 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PENMQ (40S ribosomal protein S0 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PARBP (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 71/149 (47.65%), Postives = 90/149 (60.40%), Query Frame = -1
Query:  356 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR---XXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQ-KPIPG 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FYR                 A +   A   + L  GD W +Q   G  AG  V    +PG
Sbjct:  117 SFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLANRESEWDVVVDLYFYRDPEAEENKEIEETKVPGAEEVGAAAIESGLV-GDSWQAQATPGFSAGVAVPGTAVPG 264          
The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RSSA_ASPFU6.484e-2945.5740S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_ASPFC6.484e-2945.5740S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_AEDAE6.484e-2964.5240S ribosomal protein SA OS=Aedes aegypti GN=AAEL0... [more]
RSSA_PNECA8.468e-2963.0440S ribosomal protein S0 OS=Pneumocystis carinii G... [more]
RSSA_CHAGB8.468e-2966.3040S ribosomal protein S0 OS=Chaetomium globosum GN... [more]
RSSA_ORNPR1.106e-2861.2940S ribosomal protein SA OS=Ornithodoros parkeri P... [more]
RSSA_COPC71.106e-2863.0440S ribosomal protein S0 OS=Coprinopsis cinerea (s... [more]
RSSA_TALSN1.444e-2864.1340S ribosomal protein S0 OS=Talaromyces stipitatus... [more]
RSSA_PENMQ1.444e-2864.1340S ribosomal protein S0 OS=Penicillium marneffei ... [more]
RSSA_PARBP1.444e-2847.6540S ribosomal protein S0 OS=Paracoccidioides brasi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bp
TTAACTACCAAAATATTAGGTACCATCATCACCCTTTAAAAAACCTAATT
CTCAATGTCTAGAACTATAACTGCTTCAAAAAAAAAAAGAAAAAAGCCAT
AGTTCTTTGCAGAACATAAAGAAGTTCAAACTAACACATAGTTGTACCCC
AAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAAATTAGTCC
CATCCAGTAGGTGGTGGGGCAGCAGAAACATCAGGAGCTGTAACTGCTGC
CATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACTGCATCCC
ATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGGGAAATAG
GGAACACCAGGAATGGGCTTCTGAACTTCACCACCCGCCCACCCACCATC
AGCAATTTGGGAAGGCCATTGATCACCACTGGTAAGATTCGTGTTGTACT
CTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGCCTGCTTG
GTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACATCCCACTT
GTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTAGCCAAAA
GCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGCAGGAATG
CCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGGCAATGGT
GGGAATGTTTCCAAGGGCAGCTTCCTTAATTGGCTGATGGTCTGTTCGTG
GATCTGTTANAATGAGAAGTCGGGGCTCATTGAATGATGTTTG
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