CF836186

Overview
NameCF836186
Unique NameCF836186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836186_ssr479 microsatellite CF836186_ssr479:479..490. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:429..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PARBD (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 71/149 (47.65%), Postives = 90/149 (60.40%), Query Frame = -1
Query:  356 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR---XXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQ-KPIPG 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FYR                 A +   A   + L  GD W +Q   G  AG  V    +PG
Sbjct:  117 SFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLANRETEWDVVVDLYFYRDPEAEENKEIEETKVPGAEEVGAAAIESGLV-GDSWQAQATPGFSAGVAVPGTAVPG 264          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_NANOT (40S ribosomal protein S0 OS=Nannizzia otae (strain CBS 113480) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 73/173 (42.20%), Postives = 95/173 (54.91%), Query Frame = -1
Query:  317 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPS-----------QIADGGW----AGGEVQKPIPGVPYFPEAPAATVP 787
            SF EPRL++ TDPRTD Q IKEA+  NIP IA CD DSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WD++VDL+FYR              A +   A  +T L   D W +             A G W    A      P  G  +  +APAAT P
Sbjct:  117 SFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDADSPTEFVDVAIPTNNKGRHAIGLVWWMLAREVLRLRGTLASRETEWDIVVDLYFYRDPEAEETKEIEEAKAAEAEEAAPDT-LNPADNWDAAGAVAPATFGGTPAAGNWEASGADWATAAPAGGESWAADAPAATEP 288          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_COCP7 (40S ribosomal protein S0 OS=Coccidioides posadasii (strain C735) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLANRETEWDVVVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_COCIM (40S ribosomal protein S0 OS=Coccidioides immitis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLANRETEWDVVVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_ASPCL (40S ribosomal protein S0 OS=Aspergillus clavatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.444e-28
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = -1
Query:  317 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXAIDYATAEYNTNLTSGDQWPSQIADGGWAGGEVQKPIPGVPYFPEAPAATVP 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR                    AE N  +    + P     G    G V+    G  +  +AP A VP
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLANRETEWDVVVDLYFYRD-----------------PEAEENKEIAEETKVPGAEEIG---AGAVESGFAGENWDTQAPGAGVP 254          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_SCLS1 (40S ribosomal protein S0 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps0 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.887e-28
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_PARBA (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.887e-28
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLANRETEWDVVVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_MALGO (40S ribosomal protein S0 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.887e-28
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 787
            SF EPR+++ TDPR DHQ I+E+A  NIP IA CDTD+P+R+VDI IP NNKG+HSIG L+WLL R  L++RG + R  + W+VMVD+FFYR
Sbjct:  116 SFKEPRVIVVTDPRVDHQAIRESAYVNIPVIALCDTDAPLRHVDIAIPGNNKGRHSIGLLWWLLCREFLRLRGIVPRTPNGWNVMVDMFFYR 207          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_BOTFB (40S ribosomal protein S0 OS=Botryotinia fuckeliana (strain B05.10) GN=rps0 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.887e-28
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  515 SFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 787
            SF EPRL+I TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR
Sbjct:  117 SFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYR 208          
BLAST of CF836186 vs. ExPASy Swiss-Prot
Match: RSSA_BOMMO (40S ribosomal protein SA OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.464e-28
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = -1
Query:  515 QTSFNEPRLLIXTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 793
            Q +F EPRLLI  DP  DHQPI EA+  NIP IA C+TDSP+R+VDI IP N K  HSIG ++WLLAR VL++RG +    +WDV+V+LFFYR
Sbjct:  113 QAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVELFFYR 205          
The following BLAST results are available for this feature:
BLAST of CF836186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RSSA_PARBD1.444e-2847.6540S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_NANOT1.444e-2842.2040S ribosomal protein S0 OS=Nannizzia otae (strain... [more]
RSSA_COCP71.444e-2864.1340S ribosomal protein S0 OS=Coccidioides posadasii... [more]
RSSA_COCIM1.444e-2864.1340S ribosomal protein S0 OS=Coccidioides immitis G... [more]
RSSA_ASPCL1.444e-2845.5740S ribosomal protein S0 OS=Aspergillus clavatus G... [more]
RSSA_SCLS11.887e-2864.1340S ribosomal protein S0 OS=Sclerotinia sclerotior... [more]
RSSA_PARBA1.887e-2863.0440S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_MALGO1.887e-2861.9640S ribosomal protein S0 OS=Malassezia globosa (st... [more]
RSSA_BOTFB1.887e-2864.1340S ribosomal protein S0 OS=Botryotinia fuckeliana... [more]
RSSA_BOMMO2.464e-2861.2940S ribosomal protein SA OS=Bombyx mori PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836186 ID=CF836186; Name=CF836186; organism=Citrus sinensis; type=EST; length=793bp
TTAACTACCAAAATATTAGGTACCATCATCACCCTTTAAAAAACCTAATT
CTCAATGTCTAGAACTATAACTGCTTCAAAAAAAAAAAGAAAAAAGCCAT
AGTTCTTTGCAGAACATAAAGAAGTTCAAACTAACACATAGTTGTACCCC
AAAAGGCTTGAAATGATTGAAACAAAACTCTCTCAAAATAAAATTAGTCC
CATCCAGTAGGTGGTGGGGCAGCAGAAACATCAGGAGCTGTAACTGCTGC
CATTGGTGGTGCCGTAACTGCTGCCATTGGTGGTGCCGGCACTGCATCCC
ATCCATCCCCACCCAAAGGAACTGTAGCTGCTGGTGCTTCTGGGAAATAG
GGAACACCAGGAATGGGCTTCTGAACTTCACCACCCGCCCACCCACCATC
AGCAATTTGGGAAGGCCATTGATCACCACTGGTAAGATTCGTGTTGTACT
CTGCTGTAGCATAATCAATAGCAGCAGTTTCTTCTTCTTCAGCCTGCTTG
GTTTCTTCTGGCTCCCTGTAGAAGAACAGATCGACCATCACATCCCACTT
GTGGCCAGGACGAATAGTGCCGCGCATCTGGAGAACCATTCTAGCCAAAA
GCCAGAAGAGACACCCAATGCTGTGTTTGCCCTTGTTATTGGCAGGAATG
CCAATATCAACATAACGCATAGGTGAGTCAGTGTCACAAAAGGCAATGGT
GGGAATGTTTCCAAGGGCAGCTTCCTTAATTGGCTGATGGTCTGTTCGTG
GATCTGTTANAATGAGAAGTCGGGGCTCATTGAATGATGTTTG
back to top