CF836187

Overview
NameCF836187
Unique NameCF836187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_HALS3 (30S ribosomal protein S2P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.807e-30
Identity = 70/184 (38.04%), Postives = 111/184 (60.33%), Query Frame = 3
Query:   99 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            +S +EAD    ++  L A VH+GT+     M+R++ + R DG+Y++++ +T ++++ AA  + A  +P  I+V S+R YG+    KFA+   A A  GR  PGT TN     + EP +L++TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   53 MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAADFL-ANYDPEQILVTSSRQYGRFPAEKFAEAVGARARTGRFIPGTLTNPDYDGYIEPDVLVVTDPIGDSQAVKEAITVGIPVIAMCDSNNQTGNVDLVVPTNNKGRRALSVVYWLLANETLDRRG 235          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METBU (30S ribosomal protein S2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.360e-30
Identity = 72/189 (38.10%), Postives = 110/189 (58.20%), Query Frame = 3
Query:   69 ATGTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 635
            A  +A A    S     I   LAA VH+GT+     M ++V++ R DG+Y++++  T E+++  A  + ++ +P  I+V SAR YGQ     F+K   A +  GR  PG+ TN +Q  F EP ++I+TDP  D Q I+EA    IP +A CDT++    VD+ IP NNKG+ ++  ++WLLAR +   R
Sbjct:   12 AETSAAAENTESTSLVPIDEYLAAGVHIGTQQKTQNMMKFVYRVRTDGLYVLDIQSTDERIRSIAHFL-SMYDPSRILVVSARQYGQYPATMFSKSVGAVSKVGRFIPGSLTNPVQEGFFEPDVVIVTDPAGDAQVIREAVNVGIPVVALCDTNNMTSNVDLVIPTNNKGRKALSLVYWLLAREIANER 199          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METB6 (30S ribosomal protein S2P OS=Methanoregula boonei (strain 6A8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.360e-30
Identity = 64/181 (35.36%), Postives = 113/181 (62.43%), Query Frame = 3
Query:   96 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            +L +    ++  LAA VH+GT+     M++++++ R DG+YI+++ +T  +++  A+ +   E P +I+V ++R YGQ    KFA    A +  GR  PG  TN +   + EP+++++TDP  D Q I EA    IP +A CDT++  ++VD+ IP NNKG+ ++  +++LL R +L++RG
Sbjct:   10 ELKEPLIPVEEYLAAGVHIGTQQKSEDMKKFIYRVRGDGLYILDIRETDARIKTVAKFLTQYEAP-EILVVTSRQYGQYPAKKFADTIGAMSATGRFIPGLLTNPVLDGYIEPKVIVVTDPIGDAQVINEAVQCGIPVVALCDTNNMTKFVDLVIPTNNKGRKALSMIYFLLTREMLRIRG 189          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METMJ (30S ribosomal protein S2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.082e-30
Identity = 68/184 (36.96%), Postives = 111/184 (60.33%), Query Frame = 3
Query:   96 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFN---EPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            +L +    ++  LAA VH+GT+     M +++++ R DG+YI+++  T E+++ AA+ +   E P  I+V ++R YGQ    KFA      A+ GR  PG  TNQ     N   EP ++++TDP  D Q I EA    IP +A CDT++  +YVD+ IP NNKG+ ++  +++LL + +L++RG
Sbjct:    9 ELKEPLLPVEEYLAAGVHIGTQQKSKDMMKFIYRVRGDGLYILDIQATDERIKTAAKFLSQYE-PSKILVVTSRQYGQYPAKKFADAIGGMAVVGRFIPGMLTNQRLHGLNKYIEPDVVVVTDPIGDSQTIAEAVQVGIPIVALCDTNNMTKYVDVVIPTNNKGRKALSVIYYLLTKELLRLRG 191          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METHJ (30S ribosomal protein S2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps2p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.082e-30
Identity = 63/181 (34.81%), Postives = 115/181 (63.54%), Query Frame = 3
Query:   96 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            +L++    ++  LAA VH+GT+     M+ ++++ R DG+YI+++ +T E++++AA+ +   + P  I+V ++R YGQ    +FA    A  I GR+ PGT TN +   + EP ++++TDP +D Q I+EA   +IP +A CDT++    VD+ +P NNKG+ ++  +++LL +  L+ +G
Sbjct:    9 ELNEPLVSVEEYLAAGVHIGTQQKSSDMKNFIYRVRGDGLYILDIRETDERIKLAAKFLSQYD-PAKILVVTSRQYGQYPARRFADSIGATPIIGRYIPGTLTNPLLPRYAEPDVVVVTDPVSDLQVIREAIQVSIPVVALCDTNNMTSLVDVVVPTNNKGRKALSMIYFLLTKEFLRHKG 188          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METBF (30S ribosomal protein S2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps2p PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.025e-30
Identity = 68/189 (35.98%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   75 GTATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 641
            G   + ++ S     I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++AA+++   + P  I+V S+R YGQ     F++     ++ GR  PG  TN     F EP ++I+TDP  D Q +KEA+   +P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   25 GEGPSVKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVAAKLLSHYD-PSRILVVSSRQYGQHPARMFSRALSTKSMLGRFIPGLLTNPQIHGFFEPDIVIVTDPAGDAQVLKEASSIGVPIVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNST 212          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_HALWD (30S ribosomal protein S2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps2p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.025e-30
Identity = 68/184 (36.96%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   99 LSQKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            +  +EAD    ++  L+A VH+GT+     MER++ + R+DG+Y++++ +T  +++ AA  + A  NP  ++V S+R YG+    KFA    A A  GR  PGT TN     + EP ++++TDP  D Q +KEA    IP IA CD+++     D+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   83 MPDEEADLLIPVEDYLSAGVHIGTQQKTSDMERFIHRVRDDGLYVLDVSQTDSRIRTAANFL-ANYNPDQMLVTSSRQYGRFPAKKFADAVGARARTGRFIPGTLTNPDYAGYIEPDVVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNQTSNTDLVVPTNNKGRRALSVVYWLLANETLDRRG 265          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METAC (30S ribosomal protein S2P OS=Methanosarcina acetivorans GN=rps2p PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.257e-30
Identity = 66/174 (37.93%), Postives = 108/174 (62.07%), Query Frame = 3
Query:  120 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT 641
            I   LAA VH+GT+     M R+V++ R DG+Y++++  T E++++A++++   + P  I+V S+R YGQ     F++     A+ GR  PG+ TN     F EP ++I+TDP  D Q +KEA+   +P +A CDT++    VD+ IP NNKG+ ++  ++WLLAR V ++  T
Sbjct:   40 IDEYLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLLSHYD-PARILVVSSRQYGQHPARMFSRALGTRAMLGRFIPGSLTNPQIHGFFEPDVIIVTDPAGDAQVLKEASSIGVPVVALCDTNNLTSNVDLVIPTNNKGRKALSLVYWLLAREVSRLNDT 212          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_UNCMA (30S ribosomal protein S2P OS=Uncultured methanogenic archaeon RC-I GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 63/168 (37.50%), Postives = 105/168 (62.50%), Query Frame = 3
Query:  132 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 635
            LAA VH+GT+     M++++++ R+DG+Y++++  T E+++ AA+ +   + P +++V  AR YGQ     FA+   A  I GR  PGT TN +   F EP ++++TDP  D Q + EA    +P +A CDT++    +D+ IP NNKG+ ++  ++WLLAR V + R
Sbjct:   25 LAAGVHIGTQQKTEDMKKFIYRVRSDGLYVLDVQSTDERIRAAAKFLSRYD-PANVLVVCARQYGQHPAEMFARAIGARHIVGRFIPGTLTNPVYMFFAEPDVVVVTDPIGDAQAVTEAISIGVPVVAMCDTNNMTSNIDLVIPTNNKGRKALALVYWLLAREVSRER 191          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_META3 (30S ribosomal protein S2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.529e-29
Identity = 65/171 (38.01%), Postives = 103/171 (60.23%), Query Frame = 3
Query:  132 LAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 644
            LA+ +H+GT+     M+R++++ R DG+Y++++ KT E++ +AA+ +   E P +I+  S R Y    + KF + T     AGR  PGT TN     F EP +L L+DPR D Q +KEA    IP +  CDT+    ++D  IP NNKG+ S+  +++L+AR  ++ RG I
Sbjct:   14 LASGIHIGTQQKTEDMKRFIYRVRADGLYVLDVRKTDERIGLAAKFLSKYE-PEEILAVSRRIYSVGPLKKFGQTTGITTAAGRFVPGTLTNPSSRKFLEPEVLFLSDPRIDRQALKEAIEIGIPIVGMCDTEHLTSFIDFIIPTNNKGRKSVSLVYYLIAREYMKNRGLI 183          
The following BLAST results are available for this feature:
BLAST of CF836187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_HALS31.807e-3038.0430S ribosomal protein S2P OS=Halobacterium salinar... [more]
RS2_METBU2.360e-3038.1030S ribosomal protein S2P OS=Methanococcoides burt... [more]
RS2_METB62.360e-3035.3630S ribosomal protein S2P OS=Methanoregula boonei ... [more]
RS2_METMJ3.082e-3036.9630S ribosomal protein S2P OS=Methanoculleus marisn... [more]
RS2_METHJ3.082e-3034.8130S ribosomal protein S2P OS=Methanospirillum hung... [more]
RS2_METBF4.025e-3035.9830S ribosomal protein S2P OS=Methanosarcina barker... [more]
RS2_HALWD4.025e-3036.9630S ribosomal protein S2P OS=Haloquadratum walsbyi... [more]
RS2_METAC5.257e-3037.9330S ribosomal protein S2P OS=Methanosarcina acetiv... [more]
RS2_UNCMA1.529e-2937.5030S ribosomal protein S2P OS=Uncultured methanogen... [more]
RS2_META31.529e-2938.0130S ribosomal protein S2P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836187 ID=CF836187; Name=CF836187; organism=Citrus sinensis; type=EST; length=745bp
GCGAGCAGAAGCCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGG
TTTTAAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCT
CTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATT
TGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGC
CGAAACGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCT
ACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTA
TTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCA
AAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATT
TACCAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAA
CAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAAC
ATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGA
TATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCT
TCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCT
GGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGGAGCCAG
AAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATT
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