CF836187

Overview
NameCF836187
Unique NameCF836187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_NATPD (30S ribosomal protein S2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps2p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.998e-29
Identity = 65/173 (37.57%), Postives = 104/173 (60.12%), Query Frame = 3
Query:  120 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            ++  LAA VH+GT+     M+R++ + R DG+Y++++ +T ++++ AA  +   + P  I+V S+R YG+    KFA    A A  GR  PGT TN     + EP ++++TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   92 VEDYLAAGVHIGTQQKTKSMDRFIHRVRTDGLYVLDVSQTDQRIRTAASFLSNYQ-PEQILVASSRQYGRFPAEKFADAVGARARTGRFIPGTLTNPDYDGYIEPDVVVVTDPIGDSQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVIYWLLANETLDRRG 263          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_HALMA (30S ribosomal protein S2P OS=Haloarcula marismortui GN=rps2p PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.609e-29
Identity = 69/182 (37.91%), Postives = 105/182 (57.69%), Query Frame = 3
Query:  105 QKEAD----IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 638
            Q EAD    ++  L A VH+GT+     MER++ + R DG+Y++++  T E+++ AA  +   E P  I+  S+R YG+    KFA+   A    GR  PGT TN     + EP ++++TDP  D Q +KEA    IP IA CD+++    VD+ +P NNKG+ ++  ++WLLA   L  RG
Sbjct:   73 QSEADLLIPVEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAADFLSNYE-PEQILAASSRQYGRFPAEKFAEAIGARVRTGRFIPGTLTNPDYDGYIEPDIVVVTDPIGDAQAVKEAITVGIPVIAMCDSNNTTSNVDLVVPTNNKGRKALSVVYWLLANETLDRRG 253          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_METLZ (30S ribosomal protein S2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps2p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 67/183 (36.61%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   96 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 644
            +L++    ++  LAA VH+GT+  D  M+ ++++ R+DG+YII++ KT E+++  A+ +   E P  I V ++R YGQ    KFA    A +  GR  PGT TN     + EP ++I+TDP  D Q I EA    +P IA CD ++    VD+ IP NNKG+ ++  +++LL +  L+ +G +
Sbjct:    9 ELNEPLVSVEEYLAAGVHIGTQQKDNDMKDFIYRVRSDGLYIIDIRKTDERIKQVAKFLARYE-PAKIFVVTSRQYGQYPAQKFADTIGALSHVGRFIPGTLTNPKLPKYVEPSVVIVTDPIGDAQVITEAVQCGMPVIALCDINNRTNNVDLVIPTNNKGRKALSMVYFLLTKEFLRQKGIV 190          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_AERPE (30S ribosomal protein S2P OS=Aeropyrum pernix GN=rps2p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 69/182 (37.91%), Postives = 104/182 (57.14%), Query Frame = 3
Query:  138 AEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 683
            A V  GT+ C   M ++V +   +G Y ++  K  E+L MAA+ +   E P  I V S R YGQ+ V    +     AI GR  PGTFTN     + EP ++++TDPR D Q + EA+   IP +A  DTD+ +  +D+ IPANN+G+ S+  ++W+L R +L+ RG ++P    DV  + F
Sbjct:   18 AGVIYGTQICTRYMRQFVHRILPEGYYQLDYLKIDERLAMAAKFLSTFE-PEKIAVVSVRIYGQKPVRMMCERVGCKAITGRIIPGTFTNPNLEHYVEPDVVVVTDPRMDRQAVVEASKVGIPVVALVDTDNSIENIDLVIPANNRGRRSLALIYWILTREILRRRGVLKPDEDLDVSYEEF 198          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_KORCO (30S ribosomal protein S2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps2p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 68/176 (38.64%), Postives = 103/176 (58.52%), Query Frame = 3
Query:  123 QMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP 650
            Q  L + VH+GT      ME+++++ R DG+ II++ K  E+++ A + +   + P  ++  SAR YG + V KFA+YT A  I GR  PGT TN       EP +++L+DPR D Q   E+    IP +A  D D+ +  +D+ IP NNKG+ S+  ++WLL R VL+ R  I P
Sbjct:   24 QKYLLSGVHVGTGIRTKDMEKFIYRVRPDGLCIIDIRKIDERIRTAGKFLARFD-PDRVLAVSARIYGFKPVRKFAEYTGAMYITGRILPGTLTNPQAPLHLEPDVVLLSDPRVDRQIHIESVRMGIPVVALVDADNMLENIDLAIPVNNKGRRSLALVYWLLTREVLRNRKVIPP 198          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_ENCCU (40S ribosomal protein S0 OS=Encephalitozoon cuniculi GN=RPS0 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 65/173 (37.57%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  120 IQMMLAAEVHLGTKNCDFQMERYVFKRR-NDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMR 635
            +++++ ++ HLG  + +    RY++  R  D I II++  TWEKL +AAR    I++P  I V S + +G++ V+KF +   A  I GR  PG+FTN       +PR+LI++D   D Q I E+   N+PTIAF +TD+ +  VDI IP NN+   +I   F++L+R++  M+
Sbjct:   19 VKLLIVSQSHLGGTSTNKSFARYLYGTRPRDRINIIDINATWEKLIIAARAFCGIKHPSSIAVVSTKTFGRKPVVKFCEAVGATPITGRFIPGSFTNSEVKRVYDPRVLIVSDTYADKQAILESQYCNLPTIAFVNTDNSLVGVDIAIPMNNRSPSAIAAGFFILSRLINYMK 191          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_NANEQ (30S ribosomal protein S2P OS=Nanoarchaeum equitans GN=rps2p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.767e-28
Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 3
Query:  120 IQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 683
            I + + A +H+GT++    M+ YV K R DG+ I ++ K  E+L++A++++   E P +I+V   R      + KF++ T   A  GR+ PGT TN     + EP ++++TDP  D   + +A    I  +A CDT+    Y+D  IPANN+G  S+  ++W+LAR  L+ RG I    +  V V+ F
Sbjct:    7 INVYVKAGIHIGTRHLTKDMKPYVSKIREDGLAIFDIRKIDERLRLASKMLSYYE-PNEILVVGRRETAITPIKKFSEITKVKAFPGRYPPGTLTNPQLKYYMEPEVILITDPIMDKNALHDAYESGITILALCDTNHTKNYIDFCIPANNRGSKSLALIYWILAREYLRNRGVIGKDEQLKVPVEEF 193          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_NITMS (30S ribosomal protein S2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps2p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.300e-24
Identity = 59/187 (31.55%), Postives = 107/187 (57.22%), Query Frame = 3
Query:  129 MLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVI--VAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLF 683
            +L+  + +GT+     M  ++ K   +G+Y+++L  T +K++ AA+ I  + +EN   +IV S R Y +  + KF +   +  + GR  PGT TN     + EP+L++++DP+ D Q I EA    IP I   +TD+    +D+ IPANN+G+ ++  ++WLL R +L  +G ++     ++ +D F
Sbjct:   14 ILSTGIRVGTQVKTKFMRPFITKASPEGLYMLDLDITLDKIKTAAKFINRLGVEN---LIVCSGRQYAETPIEKFCETLGSKKLLGRFMPGTLTNPSLPYYIEPKLVLISDPQVDEQAITEATNAGIPVIGIANTDNITSNLDVIIPANNRGRKALATVYWLLVRQILIEKGELKEEDPMNIEIDDF 197          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RS2_CENSY (30S ribosomal protein S2P OS=Cenarchaeum symbiosum GN=rps2p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.099e-19
Identity = 56/175 (32.00%), Postives = 97/175 (55.43%), Query Frame = 3
Query:  126 MMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPG--DIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 644
            ++  + + +GT+     M++++      G Y ++L  T  +++ AA+ I   E+ G  ++IV S +   +  + KFA+      I  R  PGT TN     + EP+LL++ DP+ D Q + EA    IP I   ++D+    +D+ IPANN+G+ ++  +FWLLAR VL +RG +
Sbjct:   15 LITTSGISIGTQVKTKFMKQFISDTDPTGTYTLDLEATQGRIKAAAQFI---EHTGASELIVCSGKDSARVPIRKFAELVGCKDIHKRFMPGTLTNPDLPKYMEPKLLLVCDPQVDAQAVTEATNAGIPVIGIANSDNVTSRLDVIIPANNRGRGALAAIFWLLAREVLVIRGEV 186          
The following BLAST results are available for this feature:
BLAST of CF836187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RS2_NATPD1.998e-2937.5730S ribosomal protein S2P OS=Natronomonas pharaoni... [more]
RS2_HALMA2.609e-2937.9130S ribosomal protein S2P OS=Haloarcula marismortu... [more]
RS2_METLZ3.407e-2936.6130S ribosomal protein S2P OS=Methanocorpusculum la... [more]
RS2_AERPE3.407e-2937.9130S ribosomal protein S2P OS=Aeropyrum pernix GN=r... [more]
RS2_KORCO9.914e-2938.6430S ribosomal protein S2P OS=Korarchaeum cryptofil... [more]
RSSA_ENCCU3.767e-2837.5740S ribosomal protein S0 OS=Encephalitozoon cunicu... [more]
RS2_NANEQ3.767e-2834.5730S ribosomal protein S2P OS=Nanoarchaeum equitans... [more]
RS2_NITMS3.300e-2431.5530S ribosomal protein S2P OS=Nitrosopumilus mariti... [more]
RS2_CENSY1.099e-1932.0030S ribosomal protein S2P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836187 ID=CF836187; Name=CF836187; organism=Citrus sinensis; type=EST; length=745bp
GCGAGCAGAAGCCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGG
TTTTAAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCT
CTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATT
TGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGC
CGAAACGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCT
ACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTA
TTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCA
AAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATT
TACCAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAA
CAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAAC
ATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGA
TATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCT
TCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCT
GGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGGAGCCAG
AAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATT
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