CF836187

Overview
NameCF836187
Unique NameCF836187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_BOVIN (40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4)

HSP 1 Score: 270.396 bits (690), Expect = 7.251e-72
Identity = 129/197 (65.48%), Postives = 155/197 (78.68%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FY
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_DROWI (40S ribosomal protein SA OS=Drosophila willistoni GN=sta PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.470e-72
Identity = 132/197 (67.01%), Postives = 155/197 (78.68%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ IINLGKTWEKL +AAR IVAIEN  D+ V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFY
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNIINLGKTWEKLVLAARAIVAIENASDVFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPMTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSPHSIGLMWWLLAREVLRLRGTISRSIEWPVVVDLFFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_SOLSE (40S ribosomal protein SA OS=Solea senegalensis GN=rpsa PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.615e-71
Identity = 129/197 (65.48%), Postives = 152/197 (77.16%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L  KE D+   LAA  HLG  N DFQM+ YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H WDVM DL+FY
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDHYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLLVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWDVMPDLYFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_SPAAU (40S ribosomal protein SA OS=Sparus aurata GN=rpsa PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.110e-71
Identity = 129/197 (65.48%), Postives = 153/197 (77.66%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L  KE D+   LAA  HLG  N DFQM++YV+KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FY
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMDQYVYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_CRIGR (40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 3.598e-71
Identity = 128/197 (64.97%), Postives = 154/197 (78.17%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L  KE D+   LAA  HLG  N DFQME+Y++KR++DGIYIINL +TWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR V +MRGTI   H W+VM DL+FY
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_POSPM (40S ribosomal protein S0 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.700e-71
Identity = 127/201 (63.18%), Postives = 160/201 (79.60%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFY 689
            P  LS  + +IQ++LAA+ H+G+KNCD QM  YV+KRR DGI+I+N+GKTWEKL  AAR+I AIENP D+ V SARPYG RAVLK+A  T A AIAGR TPG+FTN +  SF EPRL+++TDPR DHQ I+EA+  NIP IAFCDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFY
Sbjct:    6 PSVLSATDEEIQLLLAAQAHIGSKNCDKQMLPYVWKRRADGIHILNIGKTWEKLVFAARIIAAIENPNDVCVISARPYGHRAVLKYAANTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRVDHQAIREASYVNIPVIAFCDTDAPLKFVDVAIPTNNKSRHSIGLMWWLLAREVLRLRGTIPRTTDGWNVMVDMFFY 206          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.017e-71
Identity = 128/197 (64.97%), Postives = 151/197 (76.65%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L  KE D+   LAA  HLG  N DFQME Y +KR++DG+YIINL KTWEKL +AAR IVAIENP D+ V S+R  GQRAVLKFA  T A    GR TPGTFTNQ+Q +F EPRLLI+TDPR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM DL+FY
Sbjct:    8 LQMKEEDVLKFLAAGTHLGGTNMDFQMEHYTYKRKSDGVYIINLKKTWEKLLLAARAIVAIENPADVCVISSRNTGQRAVLKFASATGATTFHGRFTPGTFTNQIQAAFREPRLLIVTDPRADHQPLTEASYVNIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVMPDLYFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_URECA (40S ribosomal protein SA OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.979e-70
Identity = 129/197 (65.48%), Postives = 152/197 (77.16%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L+ KE D+   LA   HLG  N DFQME+YV+KRR DG  IIN+ KTWEK+ +AAR I AIENP DI V SARPYGQRAVLKFA YT A  IAGR TPGTFTNQ+QT+F EPRLL++TDP TDHQP+ EA+  NIP IA  +TDSP++YVDI IP NNK  HS+G ++W+LAR VL++RGTI     W+VMVDLFFY
Sbjct:    8 LALKEEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYGQRAVLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIPVIALTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPWEVMVDLFFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_CRYNE (40S ribosomal protein S0 OS=Cryptococcus neoformans GN=RPS0 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.196e-70
Identity = 127/204 (62.25%), Postives = 157/204 (76.96%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPG----HKWDVMVDLFFY 689
            P+ L   E DIQ++LAA+ HLGTKNCD  ME YV+KRR DGI++IN+GKTWEKL +AARV+  IENP D+ V SARPYG RAVLK+  +T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EAA  NIP IAFCDTD+  ++VDI IPANNK +HSIG +++LL R VL++RGT+  G      WDV+ DLFFY
Sbjct:    7 PKALQATEDDIQLLLAAQCHLGTKNCDKSMENYVWKRRADGIHVINVGKTWEKLVLAARVLATIENPNDVCVISARPYGHRAVLKYGSFTGAQAIAGRFTPGSFTNYITRSFKEPRVIIVTDPRVDHQAIREAAYVNIPVIAFCDTDASTKFVDIAIPANNKSRHSIGLMWYLLCREVLRLRGTVPRGPTGPSGWDVLPDLFFY 210          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_TRIGR (40S ribosomal protein SA OS=Tripneustes gratilla PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.863e-70
Identity = 122/197 (61.93%), Postives = 156/197 (79.19%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L+ KE D+Q  LA+  H+G+ N D+QM +YV+KR+ DG YIINL +TWEKL MAAR+IVAIENP D+ V S+RPYGQRAVLKF  +T A  IAGR+TPGTFTNQ+Q +F EPR+LI+TDPR+DHQP+ EA+  NIP IA C+TDSP+RYVDI IP NNK  HSIG ++W+L+R VL++RG I     W++M DL+F+
Sbjct:    8 LALKEDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVISSRPYGQRAVLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIALCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMCDLYFF 204          
The following BLAST results are available for this feature:
BLAST of CF836187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_BOVIN7.251e-7265.4840S ribosomal protein SA OS=Bos taurus GN=RPSA PE=... [more]
RSSA_DROWI9.470e-7267.0140S ribosomal protein SA OS=Drosophila willistoni ... [more]
RSSA_SOLSE1.615e-7165.4840S ribosomal protein SA OS=Solea senegalensis GN=... [more]
RSSA_SPAAU2.110e-7165.4840S ribosomal protein SA OS=Sparus aurata GN=rpsa ... [more]
RSSA_CRIGR3.598e-7164.9740S ribosomal protein SA OS=Cricetulus griseus GN=... [more]
RSSA_POSPM4.700e-7163.1840S ribosomal protein S0 OS=Postia placenta (strai... [more]
RSSA_SALSA8.017e-7164.9740S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_URECA3.979e-7065.4840S ribosomal protein SA OS=Urechis caupo PE=2 SV=... [more]
RSSA_CRYNE5.196e-7062.2540S ribosomal protein S0 OS=Cryptococcus neoforman... [more]
RSSA_TRIGR8.863e-7061.9340S ribosomal protein SA OS=Tripneustes gratilla P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836187 ID=CF836187; Name=CF836187; organism=Citrus sinensis; type=EST; length=745bp
GCGAGCAGAAGCCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGG
TTTTAAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCT
CTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATT
TGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGC
CGAAACGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCT
ACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTA
TTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCA
AAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATT
TACCAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAA
CAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAAC
ATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGA
TATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCT
TCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCT
GGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGGAGCCAG
AAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATT
back to top