CF836187

Overview
NameCF836187
Unique NameCF836187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFU (40S ribosomal protein S0 OS=Aspergillus fumigatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.296e-68
Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 3
Query:   87 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFC (40S ribosomal protein S0 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps0 PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 8.296e-68
Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 3
Query:   87 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_NEUCR (40S ribosomal protein S0 OS=Neurospora crassa GN=rps-0 PE=3 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.415e-67
Identity = 123/204 (60.29%), Postives = 154/204 (75.49%), Query Frame = 3
Query:   81 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFY 689
            A  P   +    DI+ +LAA+ H+G+KN    M+ Y++K R DG+ I+N+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMVDL+FY
Sbjct:    4 ANLPSIFNATSTDIEQLLAAQCHIGSKNLGVHMQPYLWKTRADGVNILNVGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDADSPTEYVDVAIPTNNKGRHAIGCVWWMLAREVLRLRGTIYNRETPWDVMVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_MACHI (40S ribosomal protein SA OS=Maconellicoccus hirsutus PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.415e-67
Identity = 124/197 (62.94%), Postives = 151/197 (76.65%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            L   E DI  ML+A  HLG +N +FQME+Y++KRR+DGI I NL KTWEKL +AAR I A+E+  +I V S+RP+GQRAVLKFA +T A  IAGR TPG FTNQ+Q +F EPRLL++TDP  D QPI EA+  NIP IAFC+TDSP+RYVDI IP N K  HSIG ++WLLAR VL++RG+I    KWDV+VDLFFY
Sbjct:    8 LKLTEGDITKMLSANTHLGAENTNFQMEQYIYKRRSDGINIFNLRKTWEKLLLAARAIAAVEHAAEIFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPAEDKQPITEASYVNIPVIAFCNTDSPLRYVDIAIPCNTKSAHSIGLMWWLLAREVLRLRGSIPRDGKWDVVVDLFFY 204          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_ASPTN (40S ribosomal protein S0 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps0 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.415e-67
Identity = 124/201 (61.69%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWLLAREVLRLRGTLASREAEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_ANOGA (40S ribosomal protein SA OS=Anopheles gambiae GN=AGAP011777 PE=3 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.415e-67
Identity = 122/197 (61.93%), Postives = 156/197 (79.19%), Query Frame = 3
Query:   99 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            LS KE D+  MLAA  H+G+ + +FQME+YV+KRR DG++IINLG+T+EKL +AAR I +IE PG++   S+RPYGQRAVLK+A YT A  IAGR TPG FTNQ+QT+F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  HSIG ++W+LAR VL++RG I    +W+VM DLFF+
Sbjct:    8 LSLKEDDVTKMLAATTHIGSTSVNFQMEQYVYKRRTDGVHIINLGRTYEKLLLAARCIASIEYPGEVFAISSRPYGQRAVLKYAHYTQATPIAGRFTPGAFTNQIQTTFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPVKFVDIAIPCNTKSTHSIGLMWWMLAREVLRLRGKI-THDRWEVMPDLFFF 203          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_NEOFI (40S ribosomal protein S0 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps0 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.848e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_TALSN (40S ribosomal protein S0 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps0 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.414e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVAVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_PENMQ (40S ribosomal protein S0 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps0 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.414e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVAVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_COCP7 (40S ribosomal protein S0 OS=Coccidioides posadasii (strain C735) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.414e-67
Identity = 124/201 (61.69%), Postives = 155/201 (77.11%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLANRETEWDVVVDLYFY 207          
The following BLAST results are available for this feature:
BLAST of CF836187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ASPFU8.296e-6861.6540S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_ASPFC8.296e-6861.6540S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_NEUCR1.415e-6760.2940S ribosomal protein S0 OS=Neurospora crassa GN=r... [more]
RSSA_MACHI1.415e-6762.9440S ribosomal protein SA OS=Maconellicoccus hirsut... [more]
RSSA_ASPTN1.415e-6761.6940S ribosomal protein S0 OS=Aspergillus terreus (s... [more]
RSSA_ANOGA1.415e-6761.9340S ribosomal protein SA OS=Anopheles gambiae GN=A... [more]
RSSA_NEOFI1.848e-6761.1940S ribosomal protein S0 OS=Neosartorya fischeri (... [more]
RSSA_TALSN2.414e-6761.1940S ribosomal protein S0 OS=Talaromyces stipitatus... [more]
RSSA_PENMQ2.414e-6761.1940S ribosomal protein S0 OS=Penicillium marneffei ... [more]
RSSA_COCP72.414e-6761.6940S ribosomal protein S0 OS=Coccidioides posadasii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836187 ID=CF836187; Name=CF836187; organism=Citrus sinensis; type=EST; length=745bp
GCGAGCAGAAGCCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGG
TTTTAAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCT
CTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATT
TGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGC
CGAAACGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCT
ACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTA
TTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCA
AAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATT
TACCAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAA
CAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAAC
ATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGA
TATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCT
TCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCT
GGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGGAGCCAG
AAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATT
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