CF836187

Overview
NameCF836187
Unique NameCF836187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_COCIM (40S ribosomal protein S0 OS=Coccidioides immitis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.414e-67
Identity = 124/201 (61.69%), Postives = 155/201 (77.11%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLANRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA1_SCHJY (40S ribosomal protein S0-A OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps0a PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.414e-67
Identity = 122/203 (60.10%), Postives = 154/203 (75.86%), Query Frame = 3
Query:   81 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFY 689
            A  P  L+  + DI+ +LAA  H+G+KN D +ME YV+KRR+DG++IIN+GKTWEK+ +AARVI  IENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+I TDPR D Q IKEA+  NIP I+ CDTDSP+ +VD+ IP NNKG  SIG ++WLLAR VL++RGTI     WDVMVD++FY
Sbjct:    4 AGRPSILNATDDDIKQLLAASCHIGSKNLDVRMENYVWKRRSDGVHIINIGKTWEKIVLAARVIATIENPADVCVVSSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIATDPRADAQAIKEASYVNIPVISLCDTDSPLAHVDVAIPTNNKGYKSIGLVWWLLAREVLRLRGTISRTSPWDVMVDMYFY 206          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_UNCRE (40S ribosomal protein S0 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.117e-67
Identity = 123/201 (61.19%), Postives = 155/201 (77.11%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    D++M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDMEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_PHANO (40S ribosomal protein S0 OS=Phaeosphaeria nodorum GN=RPS0 PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 4.117e-67
Identity = 123/201 (61.19%), Postives = 153/201 (76.12%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +  + DI+M+LAA+ HLG KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+IVAI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDVM DL+FY
Sbjct:    7 PAIFNPSQQDIEMLLAAQCHLGAKNLQVHMEPYLWKTRPDGVNVINVGKTWEKIVLAARIIVAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDGDSPTEYVDVAIPTNNKGRHAIGLVWWMLAREVLRLRGTLASREAEWDVMTDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_PARBP (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain Pb03) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.117e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLANRESEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_PARBD (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain Pb18) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.117e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLANRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_PARBA (40S ribosomal protein S0 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.117e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLANRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_ASPCL (40S ribosomal protein S0 OS=Aspergillus clavatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.117e-67
Identity = 123/201 (61.19%), Postives = 154/201 (76.62%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FY
Sbjct:    7 PPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLANRETEWDVVVDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_PYRTR (40S ribosomal protein S0 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps0 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.023e-67
Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 3
Query:   90 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFY 689
            P   +  + DI+M+LAA+ HLG KN    ME Y++K R DG+ ++N+GKTWEK+ +AAR+IVAI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDVM DL+FY
Sbjct:    7 PAIFNPTQQDIEMLLAAQCHLGAKNLQVHMEPYLWKTRPDGVNVLNIGKTWEKIVLAARIIVAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFREPRLVIVTDPRTDAQAIKEASYVNIPVIALCDGDSPTEYVDVAIPTNNKGRHAIGLVWWMLAREVLRLRGTLANRETEWDVMTDLYFY 207          
BLAST of CF836187 vs. ExPASy Swiss-Prot
Match: RSSA_CHAGB (40S ribosomal protein S0 OS=Chaetomium globosum GN=RPS0 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.023e-67
Identity = 122/204 (59.80%), Postives = 153/204 (75.00%), Query Frame = 3
Query:   81 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFY 689
            A  P   +    DI+ +LAA+ H+G+KN    M+ Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+HSIG ++W+LAR VL++RGTI      WDVM DL+FY
Sbjct:    4 ANLPSIFNATSTDIEQLLAAQCHVGSKNLGVNMQPYLWKTRADGVNVINIGKTWEKITLAARIIAAIDNPSDVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTIYNRETPWDVMPDLYFY 207          
The following BLAST results are available for this feature:
BLAST of CF836187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_COCIM2.414e-6761.6940S ribosomal protein S0 OS=Coccidioides immitis G... [more]
RSSA1_SCHJY2.414e-6760.1040S ribosomal protein S0-A OS=Schizosaccharomyces ... [more]
RSSA_UNCRE4.117e-6761.1940S ribosomal protein S0 OS=Uncinocarpus reesii (s... [more]
RSSA_PHANO4.117e-6761.1940S ribosomal protein S0 OS=Phaeosphaeria nodorum ... [more]
RSSA_PARBP4.117e-6761.1940S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_PARBD4.117e-6761.1940S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_PARBA4.117e-6761.1940S ribosomal protein S0 OS=Paracoccidioides brasi... [more]
RSSA_ASPCL4.117e-6761.1940S ribosomal protein S0 OS=Aspergillus clavatus G... [more]
RSSA_PYRTR7.023e-6760.7040S ribosomal protein S0 OS=Pyrenophora tritici-re... [more]
RSSA_CHAGB7.023e-6759.8040S ribosomal protein S0 OS=Chaetomium globosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836187 ID=CF836187; Name=CF836187; organism=Citrus sinensis; type=EST; length=745bp
GCGAGCAGAAGCCTCCGTCGGTACCACGAGTCTCAGCTTTCTCTCGCAGG
TTTTAAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCT
CTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATT
TGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGC
CGAAACGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCT
ACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTA
TTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCA
AAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATT
TACCAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAA
CAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAAC
ATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGA
TATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCT
TCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCT
GGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGGAGCCAG
AAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATT
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