CF836201

Overview
NameCF836201
Unique NameCF836201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_PIG (60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.357e-31
Identity = 69/122 (56.56%), Postives = 91/122 (74.59%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E  +P+RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKFAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_OPHHA (60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.222e-30
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  LKT++++++E  +P RKYA+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_HIPCM (60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 67/122 (54.92%), Postives = 91/122 (74.59%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_XENTR (60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRA+RRRL KH+  L+T+++++++  F  RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_ICTPU (60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRAIRR+LTKH+  L T++ ++R   + MRK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKHVDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRAIRRQLTKHEQGLMTKKMQRRSRLYSMRKFAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_PLAFE (60S ribosomal protein L35 OS=Platichthys flesus GN=rpl35 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KL+KI VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRP+KTRA+RRRL KH+ SL+T++++++++ + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKNEPSQLRVAKVTGGAASKLTKICVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPRKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_DANRE (60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.951e-28
Identity = 67/122 (54.92%), Postives = 88/122 (72.13%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA+IK  +LR K K +              LRVAKVTGGA +KLSKI+VVR SIA+VLTVI+Q QK  LR+ YK KK+ PLDLRPKKTRAIRR+LTKH+ +L T++ +++   + +RK+A+K
Sbjct:    1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFAVK 122          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_SCHPO (60S ribosomal protein L35 OS=Schizosaccharomyces pombe GN=rpl35 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.115e-26
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = -2
Query:  231 IKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 587
            +K  ELR++S+ +              LRV K+ GG+ +KLSKIK  R  IA++LTVI++  + A REAYKNKK++PLDLR KKTRAIRR LT ++ S KT ++ K+E YFP+RKYA+K
Sbjct:    3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALK 121          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_YEAST (60S ribosomal protein L35 OS=Saccharomyces cerevisiae GN=RPL35A PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 60/122 (49.18%), Postives = 81/122 (66.39%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            MA +K +ELR KSK                L+V K++  +   L KIK VR SIA VLTVI+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +AS  TE+++K+++ FP RKYAIK
Sbjct:    1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIK 119          
BLAST of CF836201 vs. ExPASy Swiss-Prot
Match: RL35_CAEEL (60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 57/122 (46.72%), Postives = 81/122 (66.39%), Query Frame = -2
Query:  231 MARIKVHELRQKSKVDXXXXXXXXXXXXXXLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 596
            M ++K   LR + K                LRV+KVTGGA +KLSKI+VVR +IA++LTVI+Q QK  LR+ Y + K+ P+DLR KKTRAIRRRLT H+ SL++ +++ +     +RK+A+K
Sbjct:    1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVK 122          
The following BLAST results are available for this feature:
BLAST of CF836201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_PIG9.357e-3156.5660S ribosomal protein L35 OS=Sus scrofa GN=RPL35 P... [more]
RL35_OPHHA1.222e-3057.3860S ribosomal protein L35 OS=Ophiophagus hannah GN... [more]
RL35_HIPCM7.921e-3054.9260S ribosomal protein L35 OS=Hippocampus comes GN=... [more]
RL35_XENTR3.931e-2954.9260S ribosomal protein L35 OS=Xenopus tropicalis GN... [more]
RL35_ICTPU8.758e-2955.7460S ribosomal protein L35 OS=Ictalurus punctatus G... [more]
RL35_PLAFE1.494e-2853.2860S ribosomal protein L35 OS=Platichthys flesus GN... [more]
RL35_DANRE1.951e-2854.9260S ribosomal protein L35 OS=Danio rerio GN=rpl35 ... [more]
RL35_SCHPO3.115e-2651.2660S ribosomal protein L35 OS=Schizosaccharomyces p... [more]
RL35_YEAST4.655e-2249.1860S ribosomal protein L35 OS=Saccharomyces cerevis... [more]
RL35_CAEEL1.037e-2146.7260S ribosomal protein L35 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836201 ID=CF836201; Name=CF836201; organism=Citrus sinensis; type=EST; length=693bp
GGTTTTTTTTCCTTTAAAACTATCTTGACTGCTATTCCATCACAATCTAG
CCCATCTTGTTTAGGTTGAGATGCACCCTTCAAGTTTTACACACATAAGA
TTGAACAAAAGCAAATTTAAGTGAACAAAAATGATATTTGAAAAGGTAAC
AAAAGTAAAAATTTGTCAACAAAATAGGTTCGTAACTGCAAGATACCAAG
ATACTCCTAGAAAAAGATTCTAGCCTACACCTTAATGGCGTACTTCCTCA
TGGGAAAGTACATCTCCCTCTTCTTCTCCCGCTCGGTCTTCAGTGAAGCC
TGGTGCTTGGTAAGCCTTCTCCTGATAGCCCGGGTCTTCTTGGGACGCAG
ATCAAGGGGCAAGAACTTCTTATTCTTGTATGCCTCCCTCAATGCAGCCT
TCTGCTTTTGTGAAATGACAGTCAACACTTGTGCGATCGATAACCTCACC
ACCTTGATCTTGGATAGCTTGTTAGGGGCACCGCCGGTGACCTTAGCAAC
GCGAAGGAGGGCGAGCTCAGCCTTGAGTTCCTTCAACTGGTTCAAAAGAT
CCACCTTCGATTTCTGCCTCAGCTCATGCACCTTGATCCTAGCCATTGCT
ACGTTTGGTGTCTCTGCTCCTGCAACGGCGGCTTCCTCTGCTTATGCGGA
AAAATCTTTTCGTTTCCTGTGATACATCTCTGATCCGAACTAA
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