CF836211

Overview
NameCF836211
Unique NameCF836211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836211_ssr495 microsatellite CF836211_ssr495:495..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12843 contig Csv1_Contig12843:634..1416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: SAP2_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Oryza sativa subsp. japonica GN=SAP2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.101e-24
Identity = 57/159 (35.85%), Postives = 86/159 (54.09%), Query Frame = -2
Query:  204 LKMAEEHRCQAPRL-CVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQSTAANRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 677
            ++   E + + P L C N CGFFGS  T+ LCSKC+R   +    + SA         ++ S +      PA +                  ++ +  RC  C R VGL GF+CRCG+VFCG HRY ++H C +D++  G++ IARANPVV+ +K++K+
Sbjct:    1 MEQGSERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPSA---------AAQSAEHDQVVLPAPEGVPVDEGAMPPPPPRHGAKTKS--RCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAIARANPVVRPDKVEKL 148          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.825e-23
Identity = 67/206 (32.52%), Postives = 96/206 (46.60%), Query Frame = -2
Query:  204 EEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSS----------------------------AKHAL-------------NQTLIS----SSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQSTAA-------NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 665
            E +  Q P LC   CGF+G+P T  +CS C+++  L+ Q SS+                            A+ AL             NQ+L+S    SS VD +  ++   +                  QS +        NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E+I + NPVV  EK+QKI
Sbjct:    4 ETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKE-HLQRQNSSNGRISPPAPSVTSLSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.505e-22
Identity = 66/206 (32.04%), Postives = 96/206 (46.60%), Query Frame = -2
Query:  204 EEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSS----------------------------AKHAL-------------NQTLIS----SSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQSTAA-------NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 665
            E +  Q P LC   CGF+G+P T  +CS C+++  L+ Q SS+                            A+ AL             NQ+L+S    SS +D +  ++   +                  QS +        NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E+I + NPVV  EK+QKI
Sbjct:    4 ETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKE-HLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.354e-22
Identity = 63/206 (30.58%), Postives = 94/206 (45.63%), Query Frame = -2
Query:  204 EEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHA-----------------------------------------LNQTLIS----SSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQSTAA-------NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 665
            E +  Q P LC   CGF+G+P T  +CS C+++  L+ Q SS+ + +                                          NQ+L+S    SS +D +  ++   +                  QS +        NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E+I + NPVV  EK+QKI
Sbjct:    4 ETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKE-HLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 56/148 (37.84%), Postives = 72/148 (48.65%), Query Frame = -2
Query:  204 LCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQST---AANRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 638
            +C   CGFFGS  T  LCSKC++      QQ    +H +      S    L +    +T                    +T   A NRC  CR++VGL GF CRCG +FCG       HAC+FD+K  G+E IAR NP+V A K+ KI
Sbjct:   17 MCAAGCGFFGSAATDGLCSKCYK------QQQPQPRHLIGTAAGDSDKTSLKVVADLSTLVIKDNSGVGGEGTTVMAPPATVTKAKNRCKACRKKVGLLGFPCRCGGMFCGA------HACAFDYKAAGREAIARHNPLVVAPKINKI 152          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.840e-20
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = -2
Query:  207 CVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQSTAANRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQK 635
            C   CG +G+    NLCS C++   L+   +   +    Q+     +   ++ E P                           RC  C+R+VG+ GFKCRCG +FCG+HRYPE+H+C FD+K+ G+  +A   P+++A+KLQ+
Sbjct:   10 CEGGCGLYGTRVNNNLCSLCYKKSVLQHSPALRFEPETEQSQCCPPTNSPAVEEEPVKK-----------------------RRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: SAP14_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 14 OS=Oryza sativa subsp. japonica GN=SAP14 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = -2
Query:  213 ANRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKL 392
            ANRC TCRR+VGLTGFKCRCG  FCG HRY ++H C FD+K  G+E IA+ NPVV A+KL
Sbjct:  174 ANRCATCRRKVGLTGFKCRCGGTFCGGHRYADEHGCGFDYKSSGRELIAKQNPVVVADKL 233          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: SAP15_ORYSJ (Zinc finger AN1 domain-containing stress-associated protein 15 OS=Oryza sativa subsp. japonica GN=SAP15 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.193e-19
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = -2
Query:  204 NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 389
            NRC  CR+RVGLTGF+CRCG +FC  HR+ E H CSFD+K  G+E+IARANPV++A K+ KI
Sbjct:  113 NRCNVCRKRVGLTGFRCRCGELFCPRHRHSETHECSFDYKTAGREEIARANPVIRAAKIIKI 174          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.532e-19
Identity = 47/147 (31.97%), Postives = 77/147 (52.38%), Query Frame = -2
Query:  204 PRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXVQSTAANRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 644
            P LC+  CGFF +  T+NLCSKC+ D      +  SA++     + + ++ +++ +E                          +   C  C+++VGL GF CRCG +F  +HRYPE+H+C  D+K    + +A+ NPVVK +KL ++
Sbjct:    5 PSLCIRGCGFFSTSQTKNLCSKCYNDFL----KDESARYLATFNVNTKAAEEVTAQEATVLG---------------------SKGGC-ACKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN6_RAT (AN1-type zinc finger protein 6 OS=Rattus norvegicus GN=Zfand6 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  204 NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 389
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E+I + NPVV  EK+QKI
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
The following BLAST results are available for this feature:
BLAST of CF836211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP2_ORYSJ2.101e-2435.85Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN6_BOVIN8.825e-2332.52AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
ZFAN6_HUMAN1.505e-2232.04AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
ZFAN6_PONAB3.354e-2230.58AN1-type zinc finger protein 6 OS=Pongo abelii GN=... [more]
SAP10_ORYSJ3.708e-2137.84Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP10_ARATH1.840e-2032.17Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP14_ORYSJ2.403e-2068.33Zinc finger AN1 domain-containing stress-associate... [more]
SAP15_ORYSJ1.193e-1964.52Zinc finger AN1 domain-containing stress-associate... [more]
SAP8_ARATH4.532e-1931.97Putative zinc finger A20 and AN1 domain-containing... [more]
ZFAN6_RAT1.904e-1758.06AN1-type zinc finger protein 6 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836211 ID=CF836211; Name=CF836211; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTGTAGTAAAACTTGAAATTATCATCGAATTTTACAT
ACACCACATAATAACACTGCCAACCCCCTCCGGGCCCACCCCTTCGGTTC
CCCCGACCATCACGGCGGCGTCCGACACGAAACGACGCCGTGAAATGCCA
AATTACAAACCAAACGACAGAGAGAAGAATCGTCCGTTCGATTCCATTCA
TCATATCTTTTGAAGCTTCTCAGCCTTCACAACAGGATTTGCCCTCGCAA
TCTGCTCTTTGCCCATCTCTTTGAAATCGAACGAACACGCGTGCTGCTCC
GGGTACCTGTGGGTCCCGCAGAACACCGACCCGCACCTGCACTTGAACCC
CGTGAGCCCCACGCGCCTCCTGCAAGTCATGCACCTGTTCGCCGCCGTCG
ACTGCACCGGAGCGGCCACCTCAGCCGGCGGCTTCTCCGCCTCTGCCGCT
ACCTCCACGTCCGTCGCCGGTCTCTCGCGCAGAGACAAATCAACCGACGA
CGACGAAATCAGGGTTTGGTTAAGGGCGTGTTTGGCCGAGGAAGATTGTT
GTGCTTTCAACTGAAGATCGCGAAAACATTTGGAGCAGAGATTTTGAGTT
GTTGGGCTCCCGAAAAATCCGCAGTTGTTCACGCACAAACGGGGTGCTTG
ACATCTGTGCTCTTCCGCCATCTTCAACCTTTACAGCAAAATTTTCCATT
CCAAATCAGTTGATTGAAATCTTGCAAACTGATATAAAAATTTATAAGAC
TTCGATTTTATCCATATTATTCCTATTTGAAAT
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