CF836211

Overview
NameCF836211
Unique NameCF836211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF836211_ssr495 microsatellite CF836211_ssr495:495..506. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12843 contig Csv1_Contig12843:634..1416. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  204 NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 389
            NRC  CR++VGLTGF+CRCG+V+CG HRY + H CS+++K    E+I + NPVV  EK+QKI
Sbjct:  162 NRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN5_MOUSE (AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  204 NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 389
            NRC  CR++VGLTGF CRCG++FCG HRY ++H C +D+K     +I + NPVV AEK+Q+I
Sbjct:  152 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ZFAN5_HUMAN (AN1-type zinc finger protein 5 OS=Homo sapiens GN=ZFAND5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -2
Query:  204 NRCMTCRRRVGLTGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 389
            NRC  CR++VGLTGF CRCG++FCG HRY ++H C +D+K     +I + NPVV AEK+Q+I
Sbjct:  152 NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213          
BLAST of CF836211 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = -2
Query:  204 NRCMTCRRRVGL-TGFKCRCGSVFCGTHRYPEQHACSFDFKEMGKEQIARANPVVKAEKLQKI 389
            N C  C ++ GL + ++CRCG+ FC +HRY E H C++D+K  G+  +  ANPVV A KL KI
Sbjct:  665 NHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of CF836211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ZFAN6_MOUSE1.904e-1758.06AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN5_MOUSE5.541e-1756.45AN1-type zinc finger protein 5 OS=Mus musculus GN=... [more]
ZFAN5_HUMAN5.541e-1756.45AN1-type zinc finger protein 5 OS=Homo sapiens GN=... [more]
ANUB1_HUMAN1.081e-1247.62AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836211 ID=CF836211; Name=CF836211; organism=Citrus sinensis; type=EST; length=783bp
TTTTTTTTTTTTTTTGTAGTAAAACTTGAAATTATCATCGAATTTTACAT
ACACCACATAATAACACTGCCAACCCCCTCCGGGCCCACCCCTTCGGTTC
CCCCGACCATCACGGCGGCGTCCGACACGAAACGACGCCGTGAAATGCCA
AATTACAAACCAAACGACAGAGAGAAGAATCGTCCGTTCGATTCCATTCA
TCATATCTTTTGAAGCTTCTCAGCCTTCACAACAGGATTTGCCCTCGCAA
TCTGCTCTTTGCCCATCTCTTTGAAATCGAACGAACACGCGTGCTGCTCC
GGGTACCTGTGGGTCCCGCAGAACACCGACCCGCACCTGCACTTGAACCC
CGTGAGCCCCACGCGCCTCCTGCAAGTCATGCACCTGTTCGCCGCCGTCG
ACTGCACCGGAGCGGCCACCTCAGCCGGCGGCTTCTCCGCCTCTGCCGCT
ACCTCCACGTCCGTCGCCGGTCTCTCGCGCAGAGACAAATCAACCGACGA
CGACGAAATCAGGGTTTGGTTAAGGGCGTGTTTGGCCGAGGAAGATTGTT
GTGCTTTCAACTGAAGATCGCGAAAACATTTGGAGCAGAGATTTTGAGTT
GTTGGGCTCCCGAAAAATCCGCAGTTGTTCACGCACAAACGGGGTGCTTG
ACATCTGTGCTCTTCCGCCATCTTCAACCTTTACAGCAAAATTTTCCATT
CCAAATCAGTTGATTGAAATCTTGCAAACTGATATAAAAATTTATAAGAC
TTCGATTTTATCCATATTATTCCTATTTGAAAT
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