CF836212

Overview
NameCF836212
Unique NameCF836212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP7_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 40/122 (32.79%), Postives = 56/122 (45.90%), Query Frame = 3 
Query:  351 LCVNNCGFFGSPTTQNLCSKCFR-----------------DLQLKAQQSSSAKHALNQTLI--SSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQSTAANRCMTCXRRVGLTGFKCRCG 659
            +CV  CGFFGS  T N+CS+C+R                 DL+L     ++ K A    ++  + +S   +  E+PA                     +TA NRC  C ++VGLTGFKCRCG
Sbjct:   23 MCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDLELVGVAETTTKKARMSAVVPVAVASSSSAAAEQPAAKA------------------ATAPNRCAACRKKVGLTGFKCRCG 126
[Close]
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 42/120 (35.00%), Postives = 53/120 (44.17%), Query Frame = 3 
Query:  327 EHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQST---------AANRCMTCXRRVGLTGFKCRCG 659
            E R     LC N+CGF G+P TQNLC  CF    L A  S+S+  +L+  ++           RPA                     +T         A NRC  C +RVGLTGF+CRCG
Sbjct:   13 ELRAPEITLCANSCGFPGNPATQNLCQNCF----LAATASTSSPSSLSSPVLDKQP------PRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCG 122
[Close]
BLAST of CF836212 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 42/120 (35.00%), Postives = 53/120 (44.17%), Query Frame = 3 
Query:  327 EHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVDLSLRERPATDXXXXXXXXXXXXXXXXXXQST---------AANRCMTCXRRVGLTGFKCRCG 659
            E R     LC N+CGF G+P TQNLC  CF    L A  S+S+  +L+  ++           RPA                     +T         A NRC  C +RVGLTGF+CRCG
Sbjct:   13 ELRAPEITLCANSCGFPGNPATQNLCQNCF----LAATASTSSPSSLSSPVLDKQP------PRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCG 122
The following BLAST results are available for this feature:
BLAST of CF836212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SAP7_ORYSJ3.349e-1132.79Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSJ7.461e-1135.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSI7.461e-1135.00Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836212 ID=CF836212; Name=CF836212; organism=Citrus sinensis; type=EST; length=659bp
TTTCTTACCAACATCCCAATTACCAAACAGAAGACAAAGGCTAATCCTCC
TTATATATTTCCTTTCCAGTCGTCCCTTTTTGAAAAATCAATCAATTTCA
GCAAATTATTCCTGAAAATATTGTTTACAGGTAATGATAAATTTTTGTAT
TAGTTTCTCATAAATAGTTTTTCTTTTTTTTTTTTTGGGTTAATCCATTA
ACTTGATTTCAAATAGGAATAATATGGATAAAATCGAAGTCTTATAAATT
TTTATATCAGTTTGCAAGATTTCAATCAACTGATTTGGAATGGAAAATTT
TGCTGTAAAGGTTGAAGATGGCGGAAGAGCACAGATGTCAAGCACCCCGT
TTGTGCGTGAACAACTGCGGATTTTTCGGGAGCCCAACAACTCAAAATCT
CTGCTCCAAATGTTTTCGCGATCTTCAGTTGAAAGCACAACAATCTTCCT
CGGCCAAACACGCCCTTAACCAAACCCTGATTTCGTCGTCGTCGGTTGAT
TTGTCTCTGCGCGAGAGACCGGCGACGGACGTGGAGGTAGCGGCAGAGGC
GGAGAAGCCGCCGGCTGAGGTGGCCGCTCCGGTGCAGTCGACGGCGGCGA
ACAGGTGCATGACTTGCANGAGGCGCGTGGGGCTCACGGGGTTCAAGTGC
AGGTGCGGG
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