CF836233

Overview
NameCF836233
Unique NameCF836233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_RALEJ (Urease accessory protein ureG OS=Ralstonia eutropha (strain JMP134) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.078e-51
Identity = 101/152 (66.45%), Postives = 120/152 (78.95%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            VG+GGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  +E +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA
Sbjct:   14 VGVGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTISGALPAERIMGVETGGCPHTAIREDASINLEAVERMLAKFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPYVGA 165          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_PROM3 (Urease accessory protein ureG OS=Prochlorococcus marinus (strain MIT 9303) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.408e-51
Identity = 102/153 (66.67%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +G+ GPVG+GKTAL+ A+C+ LRD+  LA VTNDI+T+ED EFL R GAL  ERIR VETGGCPH AIRED SIN   +E+L   F   D++L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GAD
Sbjct:    7 LGVAGPVGSGKTALVEAICRRLRDQLQLAVVTNDIYTQEDAEFLTRVGALEPERIRGVETGGCPHTAIREDCSINRAAVEDLERNFPDLDVVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLADHVGAD 159          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_SYNSC (Urease accessory protein ureG OS=Synechococcus sp. (strain CC9605) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.839e-51
Identity = 103/153 (67.32%), Postives = 120/153 (78.43%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +G+ GPVG+GKTAL+ ALC+ LRD   LA VTNDI+T+ED +FL R GAL  ERIR VETGGCPH AIRED SIN   + EL   F + DL+L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GAD
Sbjct:    7 LGVAGPVGSGKTALVEALCRRLRDDLQLAVVTNDIYTQEDAQFLTRAGALDPERIRGVETGGCPHTAIREDCSINRAAVAELEAQFPELDLVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPQVGAD 159          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_RALME (Urease accessory protein ureG OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=ureG PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.839e-51
Identity = 101/163 (61.96%), Postives = 123/163 (75.46%), Query Frame = 1
Query:  148 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            ++R        VG+GGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA
Sbjct:    1 MTRTKKNPPLRVGVGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTISGALPAERIMGVETGGCPHTAIREDASINLEAVDRMLAKFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPYVGA 163          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_RALEH (Urease accessory protein ureG OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 100/152 (65.79%), Postives = 120/152 (78.95%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            VG+GGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L  +GALP ERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA
Sbjct:   14 VGVGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVSGALPAERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPYVGA 165          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_PROMM (Urease accessory protein ureG OS=Prochlorococcus marinus (strain MIT 9313) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 102/153 (66.67%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +G+ GPVG+GKTAL+ A+C+ LRD+  LA VTNDI+T+ED EFL R GAL  ERIR VETGGCPH AIRED SIN   +E+L   F   D++L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GAD
Sbjct:    7 LGVAGPVGSGKTALVEAMCRRLRDQLQLAVVTNDIYTQEDAEFLTRVGALEPERIRGVETGGCPHTAIREDCSINRAAVEDLERNFPDLDVVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAVHVGAD 159          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_METSB (Urease accessory protein ureG OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 101/154 (65.58%), Postives = 121/154 (78.57%), Query Frame = 1
Query:  175 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            F +GIGGPVG+GKTAL   LCK +R+++++AA+TNDI+TKED EFL R+ AL  ERI  VETGGCPH AIRED SINL  ++ ++  F   DL+  ESGGDNLAA FS ELAD  IY+IDVS GDKIPRKGGPGIT++DLLVINK DLA  + A
Sbjct:    8 FRIGIGGPVGSGKTALTDRLCKAMRERWNIAAITNDIYTKEDAEFLTRSAALAPERIMGVETGGCPHTAIREDASINLAAVDAMNARFPGLDLVFIESGGDNLAATFSPELADLTIYVIDVSAGDKIPRKGGPGITRSDLLVINKIDLAPLVEA 161          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_BURPS (Urease accessory protein ureG OS=Burkholderia pseudomallei GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 104/176 (59.09%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  112 SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +P   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPE RI  VETGGCPH AIRED SINL  +E +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+
Sbjct:    8 APARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTIAGALPEARIMGVETGGCPHTAIREDASINLEAVERMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGAN 173          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_BURP6 (Urease accessory protein ureG OS=Burkholderia pseudomallei (strain 668) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 104/176 (59.09%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  112 SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +P   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPE RI  VETGGCPH AIRED SINL  +E +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+
Sbjct:    8 APARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTIAGALPEARIMGVETGGCPHTAIREDASINLEAVERMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGAN 173          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_BURP0 (Urease accessory protein ureG OS=Burkholderia pseudomallei (strain 1106a) GN=ureG PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.401e-51
Identity = 104/176 (59.09%), Postives = 128/176 (72.73%), Query Frame = 1
Query:  112 SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +P   +++ PP+           VGIGGPVG+GKT L+  LCK +R++Y L A+TNDI+TKED   L   GALPE RI  VETGGCPH AIRED SINL  +E +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+GG+KIPRKGGPGIT++DLLVINKTDLA  +GA+
Sbjct:    8 APARRTKKLPPL----------RVGIGGPVGSGKTTLLEMLCKGMRERYDLVAITNDIYTKEDQRLLTIAGALPEARIMGVETGGCPHTAIREDASINLEAVERMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVINKTDLAPLVGAN 173          
The following BLAST results are available for this feature:
BLAST of CF836233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UREG_RALEJ1.078e-5166.45Urease accessory protein ureG OS=Ralstonia eutroph... [more]
UREG_PROM31.408e-5166.67Urease accessory protein ureG OS=Prochlorococcus m... [more]
UREG_SYNSC1.839e-5167.32Urease accessory protein ureG OS=Synechococcus sp.... [more]
UREG_RALME1.839e-5161.96Urease accessory protein ureG OS=Ralstonia metalli... [more]
UREG_RALEH2.401e-5165.79Urease accessory protein ureG OS=Ralstonia eutroph... [more]
UREG_PROMM2.401e-5166.67Urease accessory protein ureG OS=Prochlorococcus m... [more]
UREG_METSB2.401e-5165.58Urease accessory protein ureG OS=Methylocella silv... [more]
UREG_BURPS2.401e-5159.09Urease accessory protein ureG OS=Burkholderia pseu... [more]
UREG_BURP62.401e-5159.09Urease accessory protein ureG OS=Burkholderia pseu... [more]
UREG_BURP02.401e-5159.09Urease accessory protein ureG OS=Burkholderia pseu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836233 ID=CF836233; Name=CF836233; organism=Citrus sinensis; type=EST; length=637bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTCCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGGTGATA
AACAAAACTGACCTTGCTTCAGCAATAGGAGCTGACT
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