CF836233

Overview
NameCF836233
Unique NameCF836233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_KLEP3 (Urease accessory protein ureG OS=Klebsiella pneumoniae (strain 342) GN=ureG PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.033e-50
Identity = 102/160 (63.75%), Postives = 119/160 (74.38%), Query Frame = 1
Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA  +GA
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLAPYVGA 161          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_KLEAE (Urease accessory protein ureG OS=Klebsiella aerogenes GN=ureG PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.033e-50
Identity = 102/160 (63.75%), Postives = 119/160 (74.38%), Query Frame = 1
Query:  157 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD  IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA  +GA
Sbjct:    2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAPERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLAPYVGA 161          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_HAHCH (Urease accessory protein ureG OS=Hahella chejuensis (strain KCTC 2396) GN=ureG PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.033e-50
Identity = 97/152 (63.82%), Postives = 124/152 (81.58%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGA 633
            VGIGGPVG+GKTAL+  LC+ LR+++++A VTNDI+T+ED +FL+R+ AL E+RI  VETGGCPH AIRED S+NL  ++ L+      DL+L ESGGDNL+A FS EL+D  +Y+IDVS GDKIPRKGGPGIT++DLL+INKTDLA  +GA
Sbjct:    8 VGIGGPVGSGKTALVARLCQELRERFNIAVVTNDIYTEEDAQFLIRHQALTEDRIIGVETGGCPHTAIREDASMNLAAIDTLTARHPGLDLVLVESGGDNLSATFSPELSDLTLYVIDVSAGDKIPRKGGPGITKSDLLIINKTDLAPIVGA 159          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_SYNS9 (Urease accessory protein ureG OS=Synechococcus sp. (strain CC9902) GN=ureG PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.655e-50
Identity = 100/153 (65.36%), Postives = 119/153 (77.78%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +G+ GPVG+GKTAL+ ALC+ L ++  LA VTNDI+T+ED +FL R G LP ERIR VETGGCPH AIRED SIN   + +L   F   DL+L ESGGDNLAA+FS EL D  IY+IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GAD
Sbjct:    7 LGVAGPVGSGKTALVEALCRELCERLELAVVTNDIYTQEDAQFLTRAGVLPPERIRGVETGGCPHTAIREDCSINRAAVGDLEAQFPGLDLVLVESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPLVGAD 159          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_MYCUA (Urease accessory protein ureG OS=Mycobacterium ulcerans (strain Agy99) GN=ureG PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.655e-50
Identity = 101/191 (52.88%), Postives = 133/191 (69.63%), Query Frame = 1
Query:   67 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            HSHD    H+H+    P    +   P+           +G+GGPVG+GKTAL+ A+C+ LRD+ SLA +TNDI+T ED +FL ++  LP+ RI AV+TGGCPH AIR+DI+ NL  +++L     A DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+NKTDLA  +GAD
Sbjct:    4 HSHD----HTHDHHDRPRRVRKPGEPL----------RIGVGGPVGSGKTALVAAICRQLRDELSLAVLTNDIYTTEDADFLRKHAVLPDSRIIAVQTGGCPHTAIRDDITANLDAIDDLIAAHDALDLILVESGGDNLTATFSSGLVDVQIFVIDVAGGDKVPRKGGPGVTFSDLLVVNKTDLAPLVGAD 180          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_SINMW (Urease accessory protein ureG OS=Sinorhizobium medicae (strain WSM419) GN=ureG PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.529e-50
Identity = 102/153 (66.67%), Postives = 120/153 (78.43%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKTAL   LCK +R++YSLA VTNDI+TKED E L+R  ALP ERI  VETGGCPH AIRED SINL  + +L+  L + DL+  ESGGDNLAA FS +LAD  IY+I V  G++IPRKGGPGIT++DLLVINK DLA  +GAD
Sbjct:   10 VGIGGPVGSGKTALTEKLCKAMRERYSLAVVTNDIYTKEDAEALVRMQALPSERIVGVETGGCPHTAIREDASINLQAIADLNRRLPELDLVFIESGGDNLAATFSPDLADLTIYVISVCQGEEIPRKGGPGITKSDLLVINKKDLAPHVGAD 162          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_NOCFA (Urease accessory protein ureG OS=Nocardia farcinica GN=ureG PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.529e-50
Identity = 96/153 (62.75%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +GIGGPVG+GKTAL+ ALCK LR++ SLA +TNDI+T ED +FL R+  LP+ERI AV+TGGCPH AIR+DI+ NL  +++L +     DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+NKTDLA  +GAD
Sbjct:   30 IGIGGPVGSGKTALVAALCKQLREELSLAVLTNDIYTTEDADFLRRHAVLPDERITAVQTGGCPHTAIRDDITANLDAIDDLIAANPPLDLILVESGGDNLTATFSSGLIDVQIFVIDVAGGDKVPRKGGPGVTYSDLLVVNKTDLAPLVGAD 182          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_POLNA (Urease accessory protein ureG OS=Polaromonas naphthalenivorans (strain CJ2) GN=ureG PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.915e-50
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            VGIGGPVG+GKT L+  LCK ++DKY L A+TNDI+TKED   L  +GAL  ERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+IDV+ G+KIPRKGGPGIT++DL VINKTDLA  +GAD
Sbjct:   18 VGIGGPVGSGKTTLLEMLCKAMKDKYDLVAITNDIYTKEDQRLLTVSGALDAERIMGVETGGCPHTAIREDASINLEAIDRMLVEFPDADVVFIESGGDNLAATFSPELSDLTIYVIDVAAGEKIPRKGGPGITKSDLFVINKTDLAPYVGAD 170          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_MYCVP (Urease accessory protein ureG OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=ureG PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.915e-50
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +G+GGPVG+GKTAL+ ALC+ LRD+ SLA +TNDI+T ED +FL R+  LP++RI AV+TGGCPH AIR+DI+ NL  +++L +     DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+NKTDLA  +GAD
Sbjct:   29 IGVGGPVGSGKTALVAALCRQLRDELSLAVLTNDIYTTEDADFLRRHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDDLIAGHDDLDLILVESGGDNLTATFSSGLVDVQIFVIDVAGGDKVPRKGGPGVTFSDLLVVNKTDLAPLVGAD 181          
BLAST of CF836233 vs. ExPASy Swiss-Prot
Match: UREG_MYCSS (Urease accessory protein ureG OS=Mycobacterium sp. (strain MCS) GN=ureG PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.915e-50
Identity = 94/153 (61.44%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGAD 636
            +G+GGPVG+GKTAL+ ALC+ LRD+ SLA +TNDI+T ED +FL R+  LP++RI AV+TGGCPH AIR+DI+ NL  +++L +     DL+L ESGGDNL A FS  L D  I+++DV+GGDK+PRKGGPG+T +DLLVINKTDLA  +GAD
Sbjct:   33 IGVGGPVGSGKTALVAALCRQLRDELSLAVLTNDIYTTEDADFLRRHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDDLVAGHDHLDLILVESGGDNLTATFSSGLVDVQIFVVDVAGGDKVPRKGGPGVTFSDLLVINKTDLAPMVGAD 185          
The following BLAST results are available for this feature:
BLAST of CF836233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UREG_KLEP32.033e-5063.75Urease accessory protein ureG OS=Klebsiella pneumo... [more]
UREG_KLEAE2.033e-5063.75Urease accessory protein ureG OS=Klebsiella aeroge... [more]
UREG_HAHCH2.033e-5063.82Urease accessory protein ureG OS=Hahella chejuensi... [more]
UREG_SYNS92.655e-5065.36Urease accessory protein ureG OS=Synechococcus sp.... [more]
UREG_MYCUA2.655e-5052.88Urease accessory protein ureG OS=Mycobacterium ulc... [more]
UREG_SINMW4.529e-5066.67Urease accessory protein ureG OS=Sinorhizobium med... [more]
UREG_NOCFA4.529e-5062.75Urease accessory protein ureG OS=Nocardia farcinic... [more]
UREG_POLNA5.915e-5064.71Urease accessory protein ureG OS=Polaromonas napht... [more]
UREG_MYCVP5.915e-5061.44Urease accessory protein ureG OS=Mycobacterium van... [more]
UREG_MYCSS5.915e-5061.44Urease accessory protein ureG OS=Mycobacterium sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02K03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836233 ID=CF836233; Name=CF836233; organism=Citrus sinensis; type=EST; length=637bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGACGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTCCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAGACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGGTGATA
AACAAAACTGACCTTGCTTCAGCAATAGGAGCTGACT
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