CF836254

Overview
NameCF836254
Unique NameCF836254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836254 vs. ExPASy Swiss-Prot
Match: Y4312_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.790e-11
Identity = 68/216 (31.48%), Postives = 96/216 (44.44%), Query Frame = -2
Query:  260 GNSEGDALYALRRSLSDPDNVLQSWDPTLVNPCT--------WFHITCNQDNRVTRLDLGNSNLSGRL-VPELGKLEHLQYLELYKNNIQGTIP------VELGNL-------------------KSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTSGPFEHIPLNNFENNPRLEGPELL 805
            G+ + DAL   + SL +  + L  WD     PC+        W  + C+  + V  L L N +LSG L V  LG +  L+ +   +N+ +G IP      V L +L                   K+L+ + L  N  SG+IP SL KL  L  L L DN  TG+IP       +L  V+V++N L G IP +    +I    F  N  L G  LL
Sbjct:   26 GDGDADALLKFKSSLVNASS-LGGWDSG-EPPCSGDKGSDSKWKGVMCSNGS-VFALRLENMSLSGELDVQALGSIRGLKSISFMRNHFEGKIPRGIDGLVSLAHLYLAHNQFTGEIDGDLFSGMKALLKVHLEGNRFSGEIPESLGKLPKLTELNLEDNMFTGKIP--AFKQKNLVTVNVANNQLEGRIPLTLGLMNITF--FSGNKGLCGAPLL 234          
BLAST of CF836254 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = -2
Query:  335 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 697
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226          
BLAST of CF836254 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = -2
Query:  329 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 715
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G +P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182          
The following BLAST results are available for this feature:
BLAST of CF836254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
Y4312_ARATH3.790e-1131.48Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH4.950e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH4.950e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02K18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836254 ID=CF836254; Name=CF836254; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTACATCTAAAATTCTCATCTTGAAAGTTGAACCTT
TTTTATGAAGATCACAACGACGCTATTACAGATGCATTTAAGCAGTATAA
TACAATTTACATATATGATGGCTTCATTTCACCAATAACACTACGCTTTT
TAGGTAAAGACGCTTTCGATCTTCGCGGACACATCTATTCGAAACCTGAG
TAGAGCTTGAAGCAACAATCAATCGTTTATGAGCAGTTTGTGTCATAACT
TGCAAGTCCCAGCAACTCTGGACCTTCTAATCGAGGGTTATTCTCAAAGT
TGTTGAGTGGGATGTGTTCAAATGGTCCGCTTGTAGGAATTGTTCCACAC
AGATCATTGCTTGAAACATCCACAACTTTGAGACTTGAAATTCCAACAAG
TTCCCTGGGAATTTGTCCAGTTAGCCGATTATCGTTAAGCCGCAAAAAAA
CAAGAGATTTCAATTTAGCCAAGGAAGGAGGGATTTTCCCCGAGATGTTG
TTATTATACAAGTCCAAGCTGATGAGGCTCTTCAAGTTACCGAGCTCGAC
AGGGATAGTTCCTTGGATGTTGTTTTTGTAAAGTTCCAGGTATTGCAAAT
GCTCGAGCTTGCCCAGTTCAGGGACGAGACGGCCGGATAGATTTGAATTA
CCCAAATCCAGTCGAGTAACGCGGTTGTCCTGATTACAGGTTATGTGAAA
CCAAGTGCAGGGATTGACGAGAGTTGGATCCCAGCTCTGAAGCACGTTAT
CGGGATCTGATAAGCTTCTCCTGAGCGCGTACAGCGCGTCCCCTTCCGAG
TTTCCACTCGCCACCGCCACC
back to top