CF836271

Overview
NameCF836271
Unique NameCF836271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836271 vs. ExPASy Swiss-Prot
Match: CAPZB_YEAST (F-actin-capping protein subunit beta OS=Saccharomyces cerevisiae GN=CAP2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 51/149 (34.23%), Postives = 79/149 (53.02%), Query Frame = -1
Query:  324 YEGGISSVYMW---EDDNEG--FVACFLIKKDGSKTAQGRRRHLEEGAWDAIHVIEV--APEEEGIARYCLTSTVMLSLT-TDHESSGTFSLSGSIRRQMNMDLSVS---------EGHLCTMGKMIEEMEGKLRNSLDQVYFGKTKEM 719
            YEGGISSVY+W   E+D  G  F    L KK+ S          +   WD+IHV EV  +P       Y +T+T++L L  T  + +    LSG++ RQ   D+++            H+  +G +IE++E ++RN L+ VYF KT+++
Sbjct:  118 YEGGISSVYLWDLNEEDFNGHDFAGVVLFKKNQS----------DHSNWDSIHVFEVTTSPSSPDSFNYRVTTTIILHLDKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQMRNLLETVYFEKTRDI 256          
BLAST of CF836271 vs. ExPASy Swiss-Prot
Match: CAPZB_KLULA (F-actin-capping protein subunit beta OS=Kluyveromyces lactis GN=CAP2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = -1
Query:  258 YEGGISSVYMWE-DDNEGFVACFLIKKDGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEGI-ARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE---------GHLCTMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPFEVIMRLPDSTGL*K 719
            YEGG +S Y+W+ D++  F    L KK  S          ++  WD+IHVI    +EEG+   Y +T+TV+L L    +     SLSG++ R+ +  + +            H  ++G MIE++E KLR+ L+ VYF KT ++   LR       R  DST L K
Sbjct:  119 YEGGYTSTYLWDVDESTDFAGVILFKKAES----------DDSKWDSIHVISATHDEEGMEVTYNVTTTVILHLENLSKEQ-QLSLSGNLTRENSKTVKLQNVSTVEQLVPAHSSSLGSMIEDIESKLRSMLEIVYFEKTLDIYNVLRE------RNDDSTKLQK 266          
The following BLAST results are available for this feature:
BLAST of CF836271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAPZB_YEAST1.706e-1434.23F-actin-capping protein subunit beta OS=Saccharomy... [more]
CAPZB_KLULA8.467e-1433.94F-actin-capping protein subunit beta OS=Kluyveromy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836271 ID=CF836271; Name=CF836271; organism=Citrus sinensis; type=EST; length=719bp
TTTTTTTTTTTTTTTTTATGAGAAAAACAACTTTTCCGTAAAAATGAGGT
TATACATCAAATGTGTCATCGAAGTTGTACCTGGTTGAAAAAAAGAAAAA
AAGGGGTAAAAGAAAAAATTGTCTGGGGAACAAGCAAAGCAAAATCCTAA
AGAAGGTTCAATCTATGACCGCGCGACCTTAAAACATATCAATGTCTGAA
ATGTGAGTACAGGACAAATGACTTTCATATCTCACTAACGAATGGAAGCA
TATCTCCTTTTCACAAGCCCGTACTGTCTGGCAGTCTCATTATCACTTCA
AATGGTGGTCGTAGGGTGCAAACCATTTCTTTCGTCTTCCCAAAATAAAC
CTGATCTAGTGAGTTCCTCAGTTTGCCCTCCATTTCTTCTATCATCTTTC
CCATGGTACAAAGATGGCCCTCTGAAACTGAGAGGTCCATATTCATCTGC
CGTCTAATTGATCCAGACAAACTGAATGTGCCTGATGACTCATGATCCGT
AGTCAAAGACAACATGACAGTACTAGTTAAACAATAACGAGCTATTCCTT
CTTCCTCTGGCGCCACTTCTATAACATGTATAGCATCCCAGGCTCCCTCT
TCCAAATGTCTCCTTCTTCCCTGTGCTGTCTTTGAACCATCTTTCTTTAT
CAAAAAGCAAGCTACAAATCCTTCATTATCATCTTCCCACATGTAAACTG
ATGAAATACCACCTTCATA
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