CF836272

Overview
NameCF836272
Unique NameCF836272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_YEAST (F-actin-capping protein subunit beta OS=Saccharomyces cerevisiae GN=CAP2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 2
Query:    2 YEGAFSSVYMW---EDDNEG--FVACFLIKKDGSKTAQGRRRHLEEGAWDAIHVIEV--APEEEGIARYCLTSTVMLSLT-TDHESSGTFSLSGSIRRQMNMDLSVS---------EGHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEM 397
            YEG  SSVY+W   E+D  G  F    L KK+ S          +   WD+IHV EV  +P       Y +T+T++L L  T  + +    LSG++ RQ   D+++            H+ N+G +IE++E ++RN L+ VYF KT+++
Sbjct:  118 YEGGISSVYLWDLNEEDFNGHDFAGVVLFKKNQS----------DHSNWDSIHVFEVTTSPSSPDSFNYRVTTTIILHLDKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQMRNLLETVYFEKTRDI 256          
BLAST of CF836272 vs. ExPASy Swiss-Prot
Match: CAPZB_KLULA (F-actin-capping protein subunit beta OS=Kluyveromyces lactis GN=CAP2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = 2
Query:    2 YEGAFSSVYMWE-DDNEGFVACFLIKKDGSKTAQGRRRHLEEGAWDAIHVIEVAPEEEGI-ARYCLTSTVMLSLTTDHESSGTFSLSGSIRRQMNMDLSVSE---------GHLCNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPSEVIMRLPDSTGL*K 463
            YEG ++S Y+W+ D++  F    L KK  S          ++  WD+IHVI    +EEG+   Y +T+TV+L L    +     SLSG++ R+ +  + +            H  ++G MIE++E KLR+ L+ VYF KT ++   LR       R  DST L K
Sbjct:  119 YEGGYTSTYLWDVDESTDFAGVILFKKAES----------DDSKWDSIHVISATHDEEGMEVTYNVTTTVILHLENLSKEQ-QLSLSGNLTRENSKTVKLQNVSTVEQLVPAHSSSLGSMIEDIESKLRSMLEIVYFEKTLDIYNVLRE------RNDDSTKLQK 266          
The following BLAST results are available for this feature:
BLAST of CF836272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAPZB_YEAST4.506e-1433.56F-actin-capping protein subunit beta OS=Saccharomy... [more]
CAPZB_KLULA1.311e-1333.33F-actin-capping protein subunit beta OS=Kluyveromy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836272 ID=CF836272; Name=CF836272; organism=Citrus sinensis; type=EST; length=680bp
TTATGAAGGTGCTTTTTCATCAGTTTACATGTGGGAAGATGATAATGAAG
GCTTTGTAGCTTGCTTTTTGATAAAGAAAGATGGTTCAAAGACAGCACAG
GGAAGAAGGAGACATTTGGAAGAGGGAGCCTGGGATGCTATACATGTTAT
AGAAGTGGCGCCAGAGGAAGAAGGAATAGCTCGTTATTGTTTAACTAGTA
CTGTCATGTTGTCTTTGACTACGGATCATGAGTCATCAGGCACATTCAGT
TTGTCTGGATCAATTAGACGGCAGATGAATATGGACCTCTCAGTTTCAGA
GGGCCATCTTTGTAACATGGGAAAGATGATAGAAGAAATGGAGGGCAAAC
TGAGGAACTCACTAGATCAGGTTTATTTTGGGAAGACGAAAGAAATGGTT
TGCACCCTACGACCACCATCTGAAGTGATAATGAGACTGCCAGACAGTAC
GGGCTTGTGAAAAGGAGATATGCTTCCATTCGTTAGTGAGATATGAAAGT
CATTTGTCCTGTACTCACATTTCAGACATTGATATGTTCTAAGGTCGCGC
GGTCATAGATTGAACCTTCTCTAGGATTTTGCTTTGCTTGTTCCCCAGAC
AATTTTTTCTTTTACCCCTTTTTTTCTTTTTTTCAACCAGGTACAACTTC
GATGACACATTTGATGTATAACCTCATTTT
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