CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 1.166e-80 Identity = 142/193 (73.58%), Postives = 167/193 (86.53%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PM+VRDFHA+IGKETR Q EKWGG PD+L+ACVGGGSNA+GLFHEF+++ +RLIGVEAAG G+D+ KHAATL+ G VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD RAEYY+VTD +AL+ F++ SRLEGIIPALET+HA+AYLE LCP L ++V+N SGRGDKDVQT K L Sbjct: 215 PMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTVAKVL 407
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 6.623e-76 Identity = 137/195 (70.26%), Postives = 163/195 (83.59%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PM+VRDFHAVIG+E ++Q LE +G PD+L+ACVGGGSNAMGLFH FV +K VRLIGVEAAG G+++ KHAAT++KG VG+LHG++S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL+A K S LEGIIPALETAHA A+LEKLCPTL T++V+N SGRGDKDV T L + Sbjct: 219 PMIVRDFHAVIGEEAKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTEKHAATITKGSVGILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVASSLNI 413
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 1.130e-75 Identity = 136/193 (70.47%), Postives = 164/193 (84.97%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PM+VRDFHAVIG+ET++Q + +G PDVL+ACVGGGSNAMGLFH FV DK VR+IGVEAAG G+++G+HAAT+++G VGVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD EA+EA + S+LEGIIPALETAHA AYLEKLCPTL +++V+N SGRGDKDV T + L Sbjct: 221 PMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 1.475e-75 Identity = 135/193 (69.95%), Postives = 164/193 (84.97%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PM+VRDFHAVIG+ET++Q + +G PDVL+ACVGGGSNAMGLFH FV DK VR+IGVEAAG G+++G+HAAT+++G +GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD EA+EA + S+LEGIIPALETAHA AYLEKLCPTL +++V+N SGRGDKDV T + L Sbjct: 221 PMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRIGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 3.287e-75 Identity = 135/195 (69.23%), Postives = 162/195 (83.08%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 PM+VRDFHAVIG+E ++Q +E +G PD+L+ACVGGGSNAMGLFH FV +K VRLIGVEAAG G+++ KHAAT++KG VG+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL A K S LEGIIPALETAHA A+LEKLCPTL T++V+N SGRGDKDV T L + Sbjct: 220 PMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTDKHAATITKGSVGILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVASSLDI 414
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 4.293e-75 Identity = 137/193 (70.98%), Postives = 163/193 (84.46%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PM+VRDFHAVIG+E+++Q E +G PDVL+ACVGGGSNAMGLFH FV D VRLIGVEAAG G+ SG+HAAT+++G GVLHGA+S LLQD DGQ++E HSISAGLDYPGVGPEHS+L++ GRAEY VTD +AL+A + S LEGIIPALETAHA A+LE+LCPTLADGT+VV+N SGRGDKDV T + L Sbjct: 222 PMLVRDFHAVIGEESKQQCQEAFGRLPDVLMACVGGGSNAMGLFHPFVQDMSVRLIGVEAAGDGVASGRHAATITEGRAGVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTVAEKL 414
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 9.564e-75 Identity = 140/193 (72.54%), Postives = 163/193 (84.46%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 PM+VRDFHAVIG+ETR+Q E +G PDVL+ACVGGGSNAMGLFH FV DVRLIGVEAAG G+ +G+HAAT+++G VGVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY VTD EALEA + SRLEGIIPALETAHA A+LE LCPTL+ GT+VV+N SGRGDKDV T + L Sbjct: 220 PMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTDVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTVAERL 412
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 9.564e-75 Identity = 135/195 (69.23%), Postives = 160/195 (82.05%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 P +VRDFHAVIG+ET++Q LE +G PD+L+ACVGGGSNAMGLFH FV + VRLIGVEAAG G+D+ KHAAT++KG VG+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A K S LEGIIPALETAHA A+L+KLCPTL T +V+N SGRGDKDV T L + Sbjct: 220 PKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVASSLDI 414
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.249e-74 Identity = 140/202 (69.31%), Postives = 162/202 (80.20%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCP--------TLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P +VR FH VIG+ETR+Q EKWGG PDVL+ACVGGGSNA+GLF+EFV D VRLIG+EAAG GL + +HAATL++G +GVLHGA+SYLLQDE+GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEYY VTDDEA+EA SRLEGIIPALETAHALAYL+ L P + +VVVN SGRGDKD+ T KYLQ Sbjct: 218 PKLVRAFHDVIGQETRQQCQEKWGGLPDVLLACVGGGSNALGLFNEFVRDPQVRLIGIEAAGEGLHTPRHAATLNRGRIGVLHGAMSYLLQDEEGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYYAVTDDEAVEALLLLSRLEGIIPALETAHALAYLKTLAPQQGLRPANAIGPQQRVVVNCSGRGDKDLNTVFKYLQ 419
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 2.131e-74 Identity = 133/194 (68.56%), Postives = 162/194 (83.51%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 PM+VRDFHAVIG+E ++Q LE +G PDVL+ACVGGGSNAMGLFH F+ D+ VR+IGVEAAG G+ +G+HAAT+++G +GVLHGA+S LLQD +GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY VTD EAL A + S EGIIPALETAHALA+LEKLCPTL+ G ++V+N SGRGDKDV T + L+ Sbjct: 220 PMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDRSVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTVAEKLK 413 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |