CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.166e-80
Identity = 142/193 (73.58%), Postives = 167/193 (86.53%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PM+VRDFHA+IGKETR Q  EKWGG PD+L+ACVGGGSNA+GLFHEF+++  +RLIGVEAAG G+D+ KHAATL+ G VGVLHGA+SYLLQDEDGQ+IE HSISAGLDYPGVGPEHS+LKD  RAEYY+VTD +AL+ F++ SRLEGIIPALET+HA+AYLE LCP L    ++V+N SGRGDKDVQT  K L
Sbjct:  215 PMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPSIRLIGVEAAGEGVDTDKHAATLTLGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDIRRAEYYSVTDKQALDGFQQLSRLEGIIPALETSHAIAYLETLCPQLNGSPRIVINCSGRGDKDVQTVAKVL 407          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMP (Tryptophan synthase beta chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpB PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.623e-76
Identity = 137/195 (70.26%), Postives = 163/195 (83.59%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PM+VRDFHAVIG+E ++Q LE +G  PD+L+ACVGGGSNAMGLFH FV +K VRLIGVEAAG G+++ KHAAT++KG VG+LHG++S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL+A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  219 PMIVRDFHAVIGEEAKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTEKHAATITKGSVGILHGSMSLLLQDKDGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDAEALDALKLVSELEGIIPALETAHAFAWLEKLCPTLDKDTEIVINCSGRGDKDVNTVASSLNI 413          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.130e-75
Identity = 136/193 (70.47%), Postives = 164/193 (84.97%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PM+VRDFHAVIG+ET++Q  + +G  PDVL+ACVGGGSNAMGLFH FV DK VR+IGVEAAG G+++G+HAAT+++G VGVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EA+EA +  S+LEGIIPALETAHA AYLEKLCPTL   +++V+N SGRGDKDV T  + L
Sbjct:  221 PMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRVGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.475e-75
Identity = 135/193 (69.95%), Postives = 164/193 (84.97%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PM+VRDFHAVIG+ET++Q  + +G  PDVL+ACVGGGSNAMGLFH FV DK VR+IGVEAAG G+++G+HAAT+++G +GVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EA+EA +  S+LEGIIPALETAHA AYLEKLCPTL   +++V+N SGRGDKDV T  + L
Sbjct:  221 PMLVRDFHAVIGEETKQQCKQAFGRSPDVLLACVGGGSNAMGLFHSFVEDKSVRMIGVEAAGDGVETGRHAATITEGRIGVLHGAMSLLLQDKDGQVEEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDTEAIEALQLVSKLEGIIPALETAHAFAYLEKLCPTLNHNSEIVINCSGRGDKDVNTVAEKL 413          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROM5 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9515) GN=trpB PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.287e-75
Identity = 135/195 (69.23%), Postives = 162/195 (83.08%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            PM+VRDFHAVIG+E ++Q +E +G  PD+L+ACVGGGSNAMGLFH FV +K VRLIGVEAAG G+++ KHAAT++KG VG+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS+LKD GRAEY +VTD EAL A K  S LEGIIPALETAHA A+LEKLCPTL   T++V+N SGRGDKDV T    L +
Sbjct:  220 PMIVRDFHAVIGEEAKKQCVESFGSLPDILLACVGGGSNAMGLFHPFVKEKSVRLIGVEAAGSGVNTDKHAATITKGSVGILHGSMSLLLQDKNGQVQEAHSISAGLDYPGVGPEHSYLKDIGRAEYGSVTDTEALNALKLVSELEGIIPALETAHAFAWLEKLCPTLEKNTEIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.293e-75
Identity = 137/193 (70.98%), Postives = 163/193 (84.46%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PM+VRDFHAVIG+E+++Q  E +G  PDVL+ACVGGGSNAMGLFH FV D  VRLIGVEAAG G+ SG+HAAT+++G  GVLHGA+S LLQD DGQ++E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD +AL+A +  S LEGIIPALETAHA A+LE+LCPTLADGT+VV+N SGRGDKDV T  + L
Sbjct:  222 PMLVRDFHAVIGEESKQQCQEAFGRLPDVLMACVGGGSNAMGLFHPFVQDMSVRLIGVEAAGDGVASGRHAATITEGRAGVLHGAMSLLLQDGDGQVMEAHSISAGLDYPGVGPEHSYLREIGRAEYAAVTDQQALDALRLVSELEGIIPALETAHAFAWLEQLCPTLADGTEVVINCSGRGDKDVNTVAEKL 414          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 9.564e-75
Identity = 140/193 (72.54%), Postives = 163/193 (84.46%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            PM+VRDFHAVIG+ETR+Q  E +G  PDVL+ACVGGGSNAMGLFH FV   DVRLIGVEAAG G+ +G+HAAT+++G VGVLHGA+S LLQD+DGQ+ E HSISAGLDYPGVGPEHS+L++ GRAEY  VTD EALEA +  SRLEGIIPALETAHA A+LE LCPTL+ GT+VV+N SGRGDKDV T  + L
Sbjct:  220 PMLVRDFHAVIGQETRQQCREAFGRLPDVLMACVGGGSNAMGLFHPFVECTDVRLIGVEAAGDGVATGRHAATITEGRVGVLHGAMSLLLQDQDGQVQEAHSISAGLDYPGVGPEHSYLREIGRAEYGAVTDAEALEALQLVSRLEGIIPALETAHAFAWLETLCPTLSAGTEVVLNCSGRGDKDVNTVAERL 412          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMS (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain AS9601) GN=trpB PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 9.564e-75
Identity = 135/195 (69.23%), Postives = 160/195 (82.05%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            P +VRDFHAVIG+ET++Q LE +G  PD+L+ACVGGGSNAMGLFH FV +  VRLIGVEAAG G+D+ KHAAT++KG VG+LHG++S LLQD++GQ+ E HSISAGLDYPGVGPEHS LKD GRAEY +VTD EAL+A K  S LEGIIPALETAHA A+L+KLCPTL   T +V+N SGRGDKDV T    L +
Sbjct:  220 PKIVRDFHAVIGEETKKQCLESFGSLPDILLACVGGGSNAMGLFHPFVKETSVRLIGVEAAGSGVDTDKHAATITKGSVGILHGSMSLLLQDDNGQVQEAHSISAGLDYPGVGPEHSHLKDIGRAEYGSVTDQEALDALKLVSELEGIIPALETAHAFAWLDKLCPTLEKDTNIVINCSGRGDKDVNTVASSLDI 414          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.249e-74
Identity = 140/202 (69.31%), Postives = 162/202 (80.20%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCP--------TLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P +VR FH VIG+ETR+Q  EKWGG PDVL+ACVGGGSNA+GLF+EFV D  VRLIG+EAAG GL + +HAATL++G +GVLHGA+SYLLQDE+GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEYY VTDDEA+EA    SRLEGIIPALETAHALAYL+ L P         +    +VVVN SGRGDKD+ T  KYLQ
Sbjct:  218 PKLVRAFHDVIGQETRQQCQEKWGGLPDVLLACVGGGSNALGLFNEFVRDPQVRLIGIEAAGEGLHTPRHAATLNRGRIGVLHGAMSYLLQDEEGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYYAVTDDEAVEALLLLSRLEGIIPALETAHALAYLKTLAPQQGLRPANAIGPQQRVVVNCSGRGDKDLNTVFKYLQ 419          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PROMA (Tryptophan synthase beta chain OS=Prochlorococcus marinus GN=trpB PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.131e-74
Identity = 133/194 (68.56%), Postives = 162/194 (83.51%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            PM+VRDFHAVIG+E ++Q LE +G  PDVL+ACVGGGSNAMGLFH F+ D+ VR+IGVEAAG G+ +G+HAAT+++G +GVLHGA+S LLQD +GQ+ E HSISAGLDYPGVGPEHS+LK+ GRAEY  VTD EAL A +  S  EGIIPALETAHALA+LEKLCPTL+ G ++V+N SGRGDKDV T  + L+
Sbjct:  220 PMLVRDFHAVIGEEAKKQCLEAFGRSPDVLLACVGGGSNAMGLFHPFIEDRSVRMIGVEAAGDGVHTGRHAATITEGRIGVLHGAMSLLLQDSNGQVQEAHSISAGLDYPGVGPEHSYLKEIGRAEYAAVTDQEALSALQLLSEKEGIIPALETAHALAFLEKLCPTLSSGKEIVINCSGRGDKDVNTVAEKLK 413          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB1_ANASP1.166e-8073.58Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]
TRPB_PROMP6.623e-7670.26Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM11.130e-7570.47Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROMT1.475e-7569.95Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM53.287e-7569.23Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNSC4.293e-7570.98Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNPW9.564e-7572.54Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMS9.564e-7569.23Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNJB1.249e-7469.31Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMA2.131e-7468.56Tryptophan synthase beta chain OS=Prochlorococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
back to top