CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.132e-67
Identity = 126/194 (64.95%), Postives = 154/194 (79.38%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P MVRDF AVIGKETR Q   + G  PD L+AC+GGGSNAMGLFH F++DK V +IGVEAAG+G+++GKHAA+L+ G  GVLHG  ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR EY +VTDDEAL AF +  RLEGIIPALE+AHALA + K  P L     +VVN SGRGDKD+QT + ++Q
Sbjct:  206 PAMVRDFQAVIGKETREQMQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.523e-67
Identity = 125/195 (64.10%), Postives = 152/195 (77.95%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            P MVRDF  VIG ET+ Q LEK G  PD ++ACVGGGSNAMG+F+ F+ DK V+L+GVEAAG G+++GKHA+ ++KG VGVLHG ++YLLQDE+G+I+  HSISAGLDYPGVGPEH++LK+ GRAEY   TD+EAL AF   SR EGIIPALE+AHALAY  KL   L +   +VVN SGRGDKDV T  K + V
Sbjct:  195 PTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFIEDKGVKLVGVEAAGEGIETGKHASAMAKGSVGVLHGMMTYLLQDEEGKILPVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDEDKIIVVNLSGRGDKDVNTVAKVMGV 389          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.523e-67
Identity = 125/194 (64.43%), Postives = 155/194 (79.90%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P MVRDF AVIGKETR Q   + G  PD L+AC+GGGSNAMGLFH F++DK V +IGVEAAG G+++GKHAA+L+ G  GVLHG  ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR +Y +VTDDEAL+AF +  RLEGIIPALE+AHALA + K  PTL     +VVN SGRGDKD+QT + +++
Sbjct:  208 PAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGHGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHME 401          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_METPP (Tryptophan synthase beta chain OS=Methylibium petroleiphilum (strain PM1) GN=trpB PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.523e-67
Identity = 126/188 (67.02%), Postives = 149/188 (79.26%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760
            P MVRDF +VIG+E  RQ  E  G +PD +IACVGGGSNAMG+F+ ++  + VRLIGVEAAG GLDSGKHAA+LS G  GVLHG  +YLLQD +GQIIE HSISAGLDYPGVGPEH++LKD GRAEY  +TDDEAL+AF R  R EGIIPALE++HA+AY  KL PT+     ++VN SGRGDKD+ T
Sbjct:  203 PEMVRDFQSVIGEECLRQMPEMAGRQPDAVIACVGGGSNAMGIFYPYIRHEGVRLIGVEAAGHGLDSGKHAASLSAGSPGVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDDEALQAFHRLCRTEGIIPALESSHAVAYAMKLAPTMRSDQSLLVNLSGRGDKDIGT 390          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.620e-67
Identity = 125/188 (66.49%), Postives = 152/188 (80.85%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760
            PMMVRDF A+IG E R+Q  E++G +PD LIACVGGGSNA+GLF+ ++++++VR+IGVEAAG G+D+ +HAATL  G  GVLHG  +YL+QDE+GQIIE HSISAGLDYPGVGPEH++LKD GRAEY  VTDDEAL AF    R EGIIPALE++HALAY  KL PTL     ++VN SGRGDKD+ T
Sbjct:  201 PMMVRDFQAIIGNEARQQMREEYGRQPDALIACVGGGSNAIGLFYPYIDEENVRMIGVEAAGKGIDTHEHAATLVTGRPGVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMAT 388          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.340e-67
Identity = 124/195 (63.59%), Postives = 151/195 (77.44%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            P MVRDF  VIG E + Q L+K G  PD +IACVGGGSNAMG+F+ F+ DK+V+LIGVEAAG G+++GKHAA ++KG VGVLHG ++YLLQDE+G+I+  +SISAGLDYPGVGPEH+FLK+  RA+Y   TD+EAL AF   S+ EGIIPALE+AHALAY  KL P L     ++VN SGRGDKDV T  K L V
Sbjct:  195 PTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTVAKVLGV 389          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.340e-67
Identity = 124/195 (63.59%), Postives = 151/195 (77.44%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            P MVRDF  VIG E + Q L+K G  PD +IACVGGGSNAMG+F+ F+ DK+V+LIGVEAAG G+++GKHAA ++KG VGVLHG ++YLLQDE+G+I+  +SISAGLDYPGVGPEH+FLK+  RA+Y   TD+EAL AF   S+ EGIIPALE+AHALAY  KL P L     ++VN SGRGDKDV T  K L V
Sbjct:  195 PTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTVAKVLGV 389          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPF (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.252e-66
Identity = 124/194 (63.92%), Postives = 154/194 (79.38%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P MVRDF AVIGKETR Q   + G  PD L+AC+GGGSNAMGLFH F++DK V +IGVEAAG+G+++GKHAA+L+ G  GVLHG  ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR +Y +VTDDEAL AF +  RLEGIIPALE+AHALA + K  P L     +VVN SGRGDKD+QT + +++
Sbjct:  210 PAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPKLPKDHLMVVNLSGRGDKDMQTVMHHME 403          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_METCA (Tryptophan synthase beta chain OS=Methylococcus capsulatus GN=trpB PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.252e-66
Identity = 124/188 (65.96%), Postives = 150/188 (79.79%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760
            P MVRDF AVIG+E RRQ LE  G  PD L+ACVGGGSNA+GLFH FV+D++V + GVEAAG G+++G+H+A LS G  GVLHG  +YL++DEDG+IIE HSISAGLDYPGVGPEH++LKD GRA Y + TD EALEAF   +R EGIIPALE++HA+AY  KL PTL+    V+VN SGRGDKD+ T
Sbjct:  209 PAMVRDFQAVIGREARRQMLEMTGRLPDALVACVGGGSNAIGLFHPFVDDREVAMYGVEAAGDGIETGRHSAPLSAGRPGVLHGNRTYLMEDEDGEIIETHSISAGLDYPGVGPEHAWLKDCGRASYVSATDAEALEAFHILTRSEGIIPALESSHAVAYALKLAPTLSSDKIVLVNLSGRGDKDIHT 396          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.136e-66
Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = -2
Query:  188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 760
            P++VRDF +VIG+E R Q LE  G  PDV++ACVGGGSNAMG+F+ FV DK VRLIGVEA G G++SGKH+A+L+ GE+GV HG LSY LQDE+GQI   HSI+ GLDYPGVGPEH++LK+ GRAEY  VTD+EAL AF   SR EGIIPALE+AHA+AY  KL   ++    ++VN SGRGDKD+   +K
Sbjct:  193 PIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKSVRLIGVEAGGKGIESGKHSASLNAGEIGVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLK 383          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB_PSEF51.132e-6764.95Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_THETN2.523e-6764.10Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_PSESY2.523e-6764.43Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_METPP2.523e-6767.02Tryptophan synthase beta chain OS=Methylibium petr... [more]
TRPB_NITEU5.620e-6766.49Tryptophan synthase beta chain OS=Nitrosomonas eur... [more]
TRPB_THEPX7.340e-6763.59Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_THEP37.340e-6763.59Tryptophan synthase beta chain OS=Thermoanaerobact... [more]
TRPB_PSEPF1.252e-6663.92Tryptophan synthase beta chain OS=Pseudomonas fluo... [more]
TRPB_METCA1.252e-6665.96Tryptophan synthase beta chain OS=Methylococcus ca... [more]
TRPB1_PYRAB2.136e-6663.35Tryptophan synthase beta chain 1 OS=Pyrococcus aby... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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