CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEF5 (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpB PE=3 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 1.132e-67 Identity = 126/194 (64.95%), Postives = 154/194 (79.38%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P MVRDF AVIGKETR Q + G PD L+AC+GGGSNAMGLFH F++DK V +IGVEAAG+G+++GKHAA+L+ G GVLHG ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR EY +VTDDEAL AF + RLEGIIPALE+AHALA + K P L +VVN SGRGDKD+QT + ++Q Sbjct: 206 PAMVRDFQAVIGKETREQMQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVEYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPNLPKDHLMVVNLSGRGDKDMQTVMHHMQ 399
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THETN (Tryptophan synthase beta chain OS=Thermoanaerobacter tengcongensis GN=trpB PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.523e-67 Identity = 125/195 (64.10%), Postives = 152/195 (77.95%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 P MVRDF VIG ET+ Q LEK G PD ++ACVGGGSNAMG+F+ F+ DK V+L+GVEAAG G+++GKHA+ ++KG VGVLHG ++YLLQDE+G+I+ HSISAGLDYPGVGPEH++LK+ GRAEY TD+EAL AF SR EGIIPALE+AHALAY KL L + +VVN SGRGDKDV T K + V Sbjct: 195 PTMVRDFQRVIGDETKEQILEKEGRLPDYVVACVGGGSNAMGIFYPFIEDKGVKLVGVEAAGEGIETGKHASAMAKGSVGVLHGMMTYLLQDEEGKILPVHSISAGLDYPGVGPEHAYLKEIGRAEYVYATDEEALAAFMDLSRTEGIIPALESAHALAYAMKLAKKLDEDKIIVVNLSGRGDKDVNTVAKVMGV 389
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSESY (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. syringae GN=trpB PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.523e-67 Identity = 125/194 (64.43%), Postives = 155/194 (79.90%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P MVRDF AVIGKETR Q + G PD L+AC+GGGSNAMGLFH F++DK V +IGVEAAG G+++GKHAA+L+ G GVLHG ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR +Y +VTDDEAL+AF + RLEGIIPALE+AHALA + K PTL +VVN SGRGDKD+QT + +++ Sbjct: 208 PAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGHGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALDAFHKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHME 401
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_METPP (Tryptophan synthase beta chain OS=Methylibium petroleiphilum (strain PM1) GN=trpB PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.523e-67 Identity = 126/188 (67.02%), Postives = 149/188 (79.26%), Query Frame = -2 Query: 197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760 P MVRDF +VIG+E RQ E G +PD +IACVGGGSNAMG+F+ ++ + VRLIGVEAAG GLDSGKHAA+LS G GVLHG +YLLQD +GQIIE HSISAGLDYPGVGPEH++LKD GRAEY +TDDEAL+AF R R EGIIPALE++HA+AY KL PT+ ++VN SGRGDKD+ T Sbjct: 203 PEMVRDFQSVIGEECLRQMPEMAGRQPDAVIACVGGGSNAMGIFYPYIRHEGVRLIGVEAAGHGLDSGKHAASLSAGSPGVLHGNRTYLLQDANGQIIETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDDEALQAFHRLCRTEGIIPALESSHAVAYAMKLAPTMRSDQSLLVNLSGRGDKDIGT 390
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_NITEU (Tryptophan synthase beta chain OS=Nitrosomonas europaea GN=trpB PE=3 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 5.620e-67 Identity = 125/188 (66.49%), Postives = 152/188 (80.85%), Query Frame = -2 Query: 197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760 PMMVRDF A+IG E R+Q E++G +PD LIACVGGGSNA+GLF+ ++++++VR+IGVEAAG G+D+ +HAATL G GVLHG +YL+QDE+GQIIE HSISAGLDYPGVGPEH++LKD GRAEY VTDDEAL AF R EGIIPALE++HALAY KL PTL ++VN SGRGDKD+ T Sbjct: 201 PMMVRDFQAIIGNEARQQMREEYGRQPDALIACVGGGSNAIGLFYPYIDEENVRMIGVEAAGKGIDTHEHAATLVTGRPGVLHGNRTYLIQDENGQIIETHSISAGLDYPGVGPEHAWLKDCGRAEYVAVTDDEALAAFHALCRFEGIIPALESSHALAYAAKLAPTLNKDQLLLVNLSGRGDKDMAT 388
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEPX (Tryptophan synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=trpB PE=3 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 7.340e-67 Identity = 124/195 (63.59%), Postives = 151/195 (77.44%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 P MVRDF VIG E + Q L+K G PD +IACVGGGSNAMG+F+ F+ DK+V+LIGVEAAG G+++GKHAA ++KG VGVLHG ++YLLQDE+G+I+ +SISAGLDYPGVGPEH+FLK+ RA+Y TD+EAL AF S+ EGIIPALE+AHALAY KL P L ++VN SGRGDKDV T K L V Sbjct: 195 PTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTVAKVLGV 389
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEP3 (Tryptophan synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpB PE=3 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 7.340e-67 Identity = 124/195 (63.59%), Postives = 151/195 (77.44%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 P MVRDF VIG E + Q L+K G PD +IACVGGGSNAMG+F+ F+ DK+V+LIGVEAAG G+++GKHAA ++KG VGVLHG ++YLLQDE+G+I+ +SISAGLDYPGVGPEH+FLK+ RA+Y TD+EAL AF S+ EGIIPALE+AHALAY KL P L ++VN SGRGDKDV T K L V Sbjct: 195 PTMVRDFQRVIGDEAKEQILQKEGRLPDYVIACVGGGSNAMGIFYPFIEDKEVKLIGVEAAGEGIETGKHAAAMAKGSVGVLHGMMTYLLQDEEGRIMPVYSISAGLDYPGVGPEHAFLKESNRAQYVYATDEEALAAFMDLSQTEGIIPALESAHALAYAMKLAPNLTKDNIIIVNLSGRGDKDVNTVAKVLGV 389
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPF (Tryptophan synthase beta chain OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpB PE=3 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.252e-66 Identity = 124/194 (63.92%), Postives = 154/194 (79.38%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P MVRDF AVIGKETR Q + G PD L+AC+GGGSNAMGLFH F++DK V +IGVEAAG+G+++GKHAA+L+ G GVLHG ++LLQD+DGQII+ HSISAGLDYPG+GPEH++L D GR +Y +VTDDEAL AF + RLEGIIPALE+AHALA + K P L +VVN SGRGDKD+QT + +++ Sbjct: 210 PAMVRDFQAVIGKETRDQLQAQEGRLPDSLVACIGGGSNAMGLFHPFLDDKSVEIIGVEAAGYGIETGKHAASLNGGVPGVLHGNRTFLLQDDDGQIIDAHSISAGLDYPGIGPEHAWLHDIGRVQYTSVTDDEALAAFHQCCRLEGIIPALESAHALAEVFKRAPKLPKDHLMVVNLSGRGDKDMQTVMHHME 403
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_METCA (Tryptophan synthase beta chain OS=Methylococcus capsulatus GN=trpB PE=3 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.252e-66 Identity = 124/188 (65.96%), Postives = 150/188 (79.79%), Query Frame = -2 Query: 197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760 P MVRDF AVIG+E RRQ LE G PD L+ACVGGGSNA+GLFH FV+D++V + GVEAAG G+++G+H+A LS G GVLHG +YL++DEDG+IIE HSISAGLDYPGVGPEH++LKD GRA Y + TD EALEAF +R EGIIPALE++HA+AY KL PTL+ V+VN SGRGDKD+ T Sbjct: 209 PAMVRDFQAVIGREARRQMLEMTGRLPDALVACVGGGSNAIGLFHPFVDDREVAMYGVEAAGDGIETGRHSAPLSAGRPGVLHGNRTYLMEDEDGEIIETHSISAGLDYPGVGPEHAWLKDCGRASYVSATDAEALEAFHILTRSEGIIPALESSHAVAYALKLAPTLSSDKIVLVNLSGRGDKDIHT 396
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 2.136e-66 Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = -2 Query: 188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 760 P++VRDF +VIG+E R Q LE G PDV++ACVGGGSNAMG+F+ FV DK VRLIGVEA G G++SGKH+A+L+ GE+GV HG LSY LQDE+GQI HSI+ GLDYPGVGPEH++LK+ GRAEY VTD+EAL AF SR EGIIPALE+AHA+AY KL ++ ++VN SGRGDKD+ +K Sbjct: 193 PIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKSVRLIGVEAGGKGIESGKHSASLNAGEIGVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRAFHELSRTEGIIPALESAHAVAYAIKLAREMSRDDVIIVNLSGRGDKDLDIVLK 383 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |