CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LEPBP (Tryptophan synthase beta chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=trpB PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.258e-50 Identity = 95/193 (49.22%), Postives = 129/193 (66.84%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P +VRD ++IGKE R Q ++ P ++ACVGGGSNA+G+FH F+ DK V + G EA G G G+H+ATL+ G+ G LHG + ++QDE GQI+ HS+SAGLDYPGVGPEH++L R +Y VTD++AL+ F +R+EGIIPALETAHA + L +++ SGRGDKDV ++ L Sbjct: 199 PTIVRDLQSIIGKEARSQFKKRNHNLPHAIVACVGGGSNAIGMFHAFLKDKHVAIYGAEAGGLGPKPGEHSATLTYGKTGFLHGTKTLIIQDEAGQIVPAHSVSAGLDYPGVGPEHAYLSQTKRVDYRMVTDEQALDCFLEVTRVEGIIPALETAHAFYVARDVAKDLGKKKDLIICLSGRGDKDVTEVLRIL 391
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LEPBA (Tryptophan synthase beta chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=trpB PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.258e-50 Identity = 95/193 (49.22%), Postives = 129/193 (66.84%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P +VRD ++IGKE R Q ++ P ++ACVGGGSNA+G+FH F+ DK V + G EA G G G+H+ATL+ G+ G LHG + ++QDE GQI+ HS+SAGLDYPGVGPEH++L R +Y VTD++AL+ F +R+EGIIPALETAHA + L +++ SGRGDKDV ++ L Sbjct: 199 PTIVRDLQSIIGKEARSQFKKRNHNLPHAIVACVGGGSNAIGMFHAFLKDKHVAIYGAEAGGLGPKPGEHSATLTYGKTGFLHGTKTLIIQDEAGQIVPAHSVSAGLDYPGVGPEHAYLSQTKRVDYRMVTDEQALDCFLEVTRVEGIIPALETAHAFYVARDVAKDLGKKKDLIICLSGRGDKDVTEVLRIL 391
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_FRATW (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=trpB PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.145e-50 Identity = 103/191 (53.93%), Postives = 140/191 (73.30%), Query Frame = -2 Query: 197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 760 P +VR+F +IG+ET++Q L K G PD +IACVGGGSNA+G+F +F+++K+V+LIGVE AG G+++G+H A L G+ G+ G + L+Q+ DGQI E +SISAGLD+P VGP+H+ L RA+Y + TDDEAL+AFK + EGIIPALE++HALA+ KL D K +VVN SGRGDKD+ T Sbjct: 197 PTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_VIBME (Tryptophan synthase beta chain OS=Vibrio metschnikovii GN=trpB PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 3.660e-50 Identity = 98/195 (50.26%), Postives = 140/195 (71.79%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYLQ 760 P +VR+F +IG+ET+ Q L + G PD ++AC+GGGSNA+G+F +F+++ +VRLIG+E AG G+D+ +H A L G+ G+ G + L+QD GQ+ E +S+SAGLD+P VGP+H+ L GRA Y ++TDDEALEAF+ +R EGII ALE++HALAY K+ D + +VVN SGRGDKD+ T + L+ Sbjct: 192 PTIVREFQRIIGEETKLQILAREGRLPDAVLACIGGGSNAIGMFADFIDEANVRLIGIEPAGKGIDTHQHGAPLKHGKTGIFFGMKAPLMQDSYGQVEESYSVSAGLDFPSVGPQHAHLNAIGRANYESITDDEALEAFQSIARNEGIIAALESSHALAYAIKMARIDPDKEQLLVVNLSGRGDKDIFTVHQLLE 386
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_HALVO (Tryptophan synthase beta chain OS=Halobacterium volcanii GN=trpB PE=3 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 3.660e-50 Identity = 111/206 (53.88%), Postives = 135/206 (65.53%), Query Frame = -2 Query: 188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHA------ATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLE--KLCPTLAD-------GTKVVVNFSGRGDKDVQTAIK 760 P MVRDF +VI +E R QA EK G PD ++AC GGGSN MG F EFV+D++ L VEA G L+ + A A+L+ G G+LHGA + LLQD DGQI+E HS+S+GLDY GVGPE + L D GR NV DD AL AF R S++EGIIPALE+AHA YLE P D G VVVN SGRGDKD+++AI+ Sbjct: 198 PSMVRDFQSVISEEARTQAREKLGRLPDAVVACAGGGSNTMGAFAEFVDDEETALYAVEAGGSTLEVDEEAGVAPNSASLTTGSEGILHGARTRLLQDRDGQIMESHSVSSGLDYAGVGPELAHLVDTGRVTAVNVDDDAALTAFHRLSQMEGIIPALESAHAFGYLEVWSSGPDAPDAENADDLGEYVVVNVSGRGDKDLESAIE 403
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCBP (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trpB PE=3 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 4.780e-50 Identity = 101/192 (52.60%), Postives = 135/192 (70.31%), Query Frame = -2 Query: 188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIK 760 P MV+ F ++IG ETR Q L++ P+++IAC+GGGSNA+G+F EF+ DK V LIGVE AG G+ +GKH A + G G+ G + ++Q +GQI E SISAGLD+P VGPEH++LK GRA Y ++TD EA+ AFK +LEGIIPALE++HALAY KL + + ++VN SGRGDKD+ T K Sbjct: 197 PTMVKKFQSIIGIETRCQILKQESCLPNIIIACIGGGSNAIGIFSEFIKDKSVCLIGVEPAGKGIKTGKHGAPMQHGSTGIYFGMKAPVMQTSEGQIKESWSISAGLDFPAVGPEHAWLKHIGRATYVSITDCEAINAFKILCKLEGIIPALESSHALAYALKLISKDTNKKQIIIVNISGRGDKDIDTIRK 388
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCMH (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Melaphis rhois GN=trpB PE=3 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 6.242e-50 Identity = 97/196 (49.49%), Postives = 138/196 (70.41%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQTAIKYLQV 760 P +V++F ++IGKET+RQ + + P+ +IACVGGGSNA+G+F F++D V LIGVE G G+ + KH A L+ GE G+ G + ++Q E+GQI E SISAGLD+P VGPEH++L RA+Y ++TD EA+ AF+ S+ EGIIPALE++HALAY KL ++ +VN SGRGDKD++T +L++ Sbjct: 197 PTIVKEFQSIIGKETKRQIVREENCLPNAVIACVGGGSNAIGIFSSFISDNSVSLIGVEPGGKGIHTNKHGAPLTHGETGIFFGMKTKIMQTEEGQIKESWSISAGLDFPAVGPEHAWLYSTKRAQYVSITDHEAVNAFRCLSKSEGIIPALESSHALAYALKLMNNHPQKNQILIVNISGRGDKDIETVKNFLKM 392
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCAP (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trpB PE=3 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 6.242e-50 Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQTAIKYLQ 760 P +V++F +IG+E ++Q LE+ PD +IACVGGGSNA+G+F +F+ D+DV LIGVE AG G+++GKH A L+ G G+ G S+L+Q ++GQI + SISAGLD+P VGPEHS+L RA+Y ++TD EALEAF+ S+ EGIIPALE++HALAY KL +V +VN SGRGDKD+ T + L+ Sbjct: 197 PTIVKEFQKMIGEEAKKQILEQENRLPDAIIACVGGGSNAIGIFSDFI-DEDVNLIGVEPAGQGIETGKHGAPLNHGRTGIYFGMKSHLMQSQEGQIEKSWSISAGLDFPSVGPEHSWLNSIHRAKYVSITDIEALEAFQILSKKEGIIPALESSHALAYALKLMYLDPKKEQVFIVNLSGRGDKDIFTVREILK 390
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SODGM (Tryptophan synthase beta chain OS=Sodalis glossinidius (strain morsitans) GN=trpB PE=3 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.065e-49 Identity = 98/189 (51.85%), Postives = 136/189 (71.96%), Query Frame = -2 Query: 197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQT 760 P +VR+F +IG+ETR Q E PD +IACVGGGSNA+G+F +F+++ VRLIGVE G G+++ +H A+L G G+ G S ++Q +GQI E +SISAGLD+P VGP+H++L GRAEY + TD+EAL+AF+R SR EGIIPALE++HALA+ ++ + ++ VVN SGRGDKD+ T Sbjct: 197 PTIVREFQRMIGEETRAQLQEHEQRLPDAVIACVGGGSNAIGMFADFIDEPAVRLIGVEPGGLGIETRQHGASLKHGRTGIYFGMKSPMMQSAEGQIEESYSISAGLDFPSVGPQHAYLDSIGRAEYISATDEEALDAFRRLSRHEGIIPALESSHALAHALRMIQAEPEKEQILVVNLSGRGDKDIFT 385
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCSC (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=trpB PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49 Identity = 100/194 (51.55%), Postives = 134/194 (69.07%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 760 P +V+ F +VIGKET++Q EK P+ +IACVGGGSNA+G+F F+ D V LIGVE G G+ + KH A+L GE G+ G S ++Q +GQI E SISAGLD+P VGPEH++L R Y ++TD EA+ AF+ S+LEGIIPALE++HALAY KL + + ++VN SGRGDKD++T K+L Sbjct: 197 PTIVKQFQSVIGKETKQQIFEKEHCLPNSVIACVGGGSNAIGIFSSFIEDTSVNLIGVEPGGIGIHTEKHGASLICGETGIFFGMKSKVMQTHEGQIKESWSISAGLDFPAVGPEHAWLDSIKRVTYVSITDSEAVHAFQHLSKLEGIIPALESSHALAYAIKLMNNYPNKNQTLIVNISGRGDKDLKTVEKFL 390 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |