CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LEPBP (Tryptophan synthase beta chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=trpB PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.258e-50
Identity = 95/193 (49.22%), Postives = 129/193 (66.84%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P +VRD  ++IGKE R Q  ++    P  ++ACVGGGSNA+G+FH F+ DK V + G EA G G   G+H+ATL+ G+ G LHG  + ++QDE GQI+  HS+SAGLDYPGVGPEH++L    R +Y  VTD++AL+ F   +R+EGIIPALETAHA      +   L     +++  SGRGDKDV   ++ L
Sbjct:  199 PTIVRDLQSIIGKEARSQFKKRNHNLPHAIVACVGGGSNAIGMFHAFLKDKHVAIYGAEAGGLGPKPGEHSATLTYGKTGFLHGTKTLIIQDEAGQIVPAHSVSAGLDYPGVGPEHAYLSQTKRVDYRMVTDEQALDCFLEVTRVEGIIPALETAHAFYVARDVAKDLGKKKDLIICLSGRGDKDVTEVLRIL 391          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LEPBA (Tryptophan synthase beta chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=trpB PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.258e-50
Identity = 95/193 (49.22%), Postives = 129/193 (66.84%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P +VRD  ++IGKE R Q  ++    P  ++ACVGGGSNA+G+FH F+ DK V + G EA G G   G+H+ATL+ G+ G LHG  + ++QDE GQI+  HS+SAGLDYPGVGPEH++L    R +Y  VTD++AL+ F   +R+EGIIPALETAHA      +   L     +++  SGRGDKDV   ++ L
Sbjct:  199 PTIVRDLQSIIGKEARSQFKKRNHNLPHAIVACVGGGSNAIGMFHAFLKDKHVAIYGAEAGGLGPKPGEHSATLTYGKTGFLHGTKTLIIQDEAGQIVPAHSVSAGLDYPGVGPEHAYLSQTKRVDYRMVTDEQALDCFLEVTRVEGIIPALETAHAFYVARDVAKDLGKKKDLIICLSGRGDKDVTEVLRIL 391          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_FRATW (Tryptophan synthase beta chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=trpB PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.145e-50
Identity = 103/191 (53.93%), Postives = 140/191 (73.30%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK---VVVNFSGRGDKDVQT 760
            P +VR+F  +IG+ET++Q L K G  PD +IACVGGGSNA+G+F +F+++K+V+LIGVE AG G+++G+H A L  G+ G+  G  + L+Q+ DGQI E +SISAGLD+P VGP+H+ L    RA+Y + TDDEAL+AFK   + EGIIPALE++HALA+  KL     D  K   +VVN SGRGDKD+ T
Sbjct:  197 PTIVREFQRMIGEETKQQMLAKEGRLPDAVIACVGGGSNAIGMFADFIDEKNVKLIGVEPAGKGIETGEHGAPLKHGKTGIFFGMKAPLMQNSDGQIEESYSISAGLDFPSVGPQHAHLLAICRAKYASATDDEALDAFKLLCKKEGIIPALESSHALAHALKL--AYEDPNKEQLLVVNLSGRGDKDIFT 385          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_VIBME (Tryptophan synthase beta chain OS=Vibrio metschnikovii GN=trpB PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.660e-50
Identity = 98/195 (50.26%), Postives = 140/195 (71.79%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYLQ 760
            P +VR+F  +IG+ET+ Q L + G  PD ++AC+GGGSNA+G+F +F+++ +VRLIG+E AG G+D+ +H A L  G+ G+  G  + L+QD  GQ+ E +S+SAGLD+P VGP+H+ L   GRA Y ++TDDEALEAF+  +R EGII ALE++HALAY  K+     D  + +VVN SGRGDKD+ T  + L+
Sbjct:  192 PTIVREFQRIIGEETKLQILAREGRLPDAVLACIGGGSNAIGMFADFIDEANVRLIGIEPAGKGIDTHQHGAPLKHGKTGIFFGMKAPLMQDSYGQVEESYSVSAGLDFPSVGPQHAHLNAIGRANYESITDDEALEAFQSIARNEGIIAALESSHALAYAIKMARIDPDKEQLLVVNLSGRGDKDIFTVHQLLE 386          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_HALVO (Tryptophan synthase beta chain OS=Halobacterium volcanii GN=trpB PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.660e-50
Identity = 111/206 (53.88%), Postives = 135/206 (65.53%), Query Frame = -2
Query:  188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHA------ATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLE--KLCPTLAD-------GTKVVVNFSGRGDKDVQTAIK 760
            P MVRDF +VI +E R QA EK G  PD ++AC GGGSN MG F EFV+D++  L  VEA G  L+  + A      A+L+ G  G+LHGA + LLQD DGQI+E HS+S+GLDY GVGPE + L D GR    NV DD AL AF R S++EGIIPALE+AHA  YLE     P   D       G  VVVN SGRGDKD+++AI+
Sbjct:  198 PSMVRDFQSVISEEARTQAREKLGRLPDAVVACAGGGSNTMGAFAEFVDDEETALYAVEAGGSTLEVDEEAGVAPNSASLTTGSEGILHGARTRLLQDRDGQIMESHSVSSGLDYAGVGPELAHLVDTGRVTAVNVDDDAALTAFHRLSQMEGIIPALESAHAFGYLEVWSSGPDAPDAENADDLGEYVVVNVSGRGDKDLESAIE 403          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCBP (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trpB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.780e-50
Identity = 101/192 (52.60%), Postives = 135/192 (70.31%), Query Frame = -2
Query:  188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIK 760
            P MV+ F ++IG ETR Q L++    P+++IAC+GGGSNA+G+F EF+ DK V LIGVE AG G+ +GKH A +  G  G+  G  + ++Q  +GQI E  SISAGLD+P VGPEH++LK  GRA Y ++TD EA+ AFK   +LEGIIPALE++HALAY  KL     +  + ++VN SGRGDKD+ T  K
Sbjct:  197 PTMVKKFQSIIGIETRCQILKQESCLPNIIIACIGGGSNAIGIFSEFIKDKSVCLIGVEPAGKGIKTGKHGAPMQHGSTGIYFGMKAPVMQTSEGQIKESWSISAGLDFPAVGPEHAWLKHIGRATYVSITDCEAINAFKILCKLEGIIPALESSHALAYALKLISKDTNKKQIIIVNISGRGDKDIDTIRK 388          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCMH (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Melaphis rhois GN=trpB PE=3 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 6.242e-50
Identity = 97/196 (49.49%), Postives = 138/196 (70.41%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQTAIKYLQV 760
            P +V++F ++IGKET+RQ + +    P+ +IACVGGGSNA+G+F  F++D  V LIGVE  G G+ + KH A L+ GE G+  G  + ++Q E+GQI E  SISAGLD+P VGPEH++L    RA+Y ++TD EA+ AF+  S+ EGIIPALE++HALAY  KL        ++ +VN SGRGDKD++T   +L++
Sbjct:  197 PTIVKEFQSIIGKETKRQIVREENCLPNAVIACVGGGSNAIGIFSSFISDNSVSLIGVEPGGKGIHTNKHGAPLTHGETGIFFGMKTKIMQTEEGQIKESWSISAGLDFPAVGPEHAWLYSTKRAQYVSITDHEAVNAFRCLSKSEGIIPALESSHALAYALKLMNNHPQKNQILIVNISGRGDKDIETVKNFLKM 392          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCAP (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trpB PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.242e-50
Identity = 103/195 (52.82%), Postives = 141/195 (72.31%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQTAIKYLQ 760
            P +V++F  +IG+E ++Q LE+    PD +IACVGGGSNA+G+F +F+ D+DV LIGVE AG G+++GKH A L+ G  G+  G  S+L+Q ++GQI +  SISAGLD+P VGPEHS+L    RA+Y ++TD EALEAF+  S+ EGIIPALE++HALAY  KL        +V +VN SGRGDKD+ T  + L+
Sbjct:  197 PTIVKEFQKMIGEEAKKQILEQENRLPDAIIACVGGGSNAIGIFSDFI-DEDVNLIGVEPAGQGIETGKHGAPLNHGRTGIYFGMKSHLMQSQEGQIEKSWSISAGLDFPSVGPEHSWLNSIHRAKYVSITDIEALEAFQILSKKEGIIPALESSHALAYALKLMYLDPKKEQVFIVNLSGRGDKDIFTVREILK 390          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_SODGM (Tryptophan synthase beta chain OS=Sodalis glossinidius (strain morsitans) GN=trpB PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.065e-49
Identity = 98/189 (51.85%), Postives = 136/189 (71.96%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKV-VVNFSGRGDKDVQT 760
            P +VR+F  +IG+ETR Q  E     PD +IACVGGGSNA+G+F +F+++  VRLIGVE  G G+++ +H A+L  G  G+  G  S ++Q  +GQI E +SISAGLD+P VGP+H++L   GRAEY + TD+EAL+AF+R SR EGIIPALE++HALA+  ++     +  ++ VVN SGRGDKD+ T
Sbjct:  197 PTIVREFQRMIGEETRAQLQEHEQRLPDAVIACVGGGSNAIGMFADFIDEPAVRLIGVEPGGLGIETRQHGASLKHGRTGIYFGMKSPMMQSAEGQIEESYSISAGLDFPSVGPQHAYLDSIGRAEYISATDEEALDAFRRLSRHEGIIPALESSHALAHALRMIQAEPEKEQILVVNLSGRGDKDIFT 385          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BUCSC (Tryptophan synthase beta chain OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=trpB PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.372e-49
Identity = 100/194 (51.55%), Postives = 134/194 (69.07%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 760
            P +V+ F +VIGKET++Q  EK    P+ +IACVGGGSNA+G+F  F+ D  V LIGVE  G G+ + KH A+L  GE G+  G  S ++Q  +GQI E  SISAGLD+P VGPEH++L    R  Y ++TD EA+ AF+  S+LEGIIPALE++HALAY  KL     +  + ++VN SGRGDKD++T  K+L
Sbjct:  197 PTIVKQFQSVIGKETKQQIFEKEHCLPNSVIACVGGGSNAIGIFSSFIEDTSVNLIGVEPGGIGIHTEKHGASLICGETGIFFGMKSKVMQTHEGQIKESWSISAGLDFPAVGPEHAWLDSIKRVTYVSITDSEAVHAFQHLSKLEGIIPALESSHALAYAIKLMNNYPNKNQTLIVNISGRGDKDLKTVEKFL 390          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB_LEPBP1.258e-5049.22Tryptophan synthase beta chain OS=Leptospira bifle... [more]
TRPB_LEPBA1.258e-5049.22Tryptophan synthase beta chain OS=Leptospira bifle... [more]
TRPB_FRATW2.145e-5053.93Tryptophan synthase beta chain OS=Francisella tula... [more]
TRPB_VIBME3.660e-5050.26Tryptophan synthase beta chain OS=Vibrio metschnik... [more]
TRPB_HALVO3.660e-5053.88Tryptophan synthase beta chain OS=Halobacterium vo... [more]
TRPB_BUCBP4.780e-5052.60Tryptophan synthase beta chain OS=Buchnera aphidic... [more]
TRPB_BUCMH6.242e-5049.49Tryptophan synthase beta chain OS=Buchnera aphidic... [more]
TRPB_BUCAP6.242e-5052.82Tryptophan synthase beta chain OS=Buchnera aphidic... [more]
TRPB_SODGM1.065e-4951.85Tryptophan synthase beta chain OS=Sodalis glossini... [more]
TRPB_BUCSC2.372e-4951.55Tryptophan synthase beta chain OS=Buchnera aphidic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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