CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_AERPE (Tryptophan synthase beta chain 2 OS=Aeropyrum pernix GN=trpB2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 63/192 (32.81%), Postives = 89/192 (46.35%), Query Frame = -2
Query:  182 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKG----EVGVLHGALSYLLQDEDGQIIEPHSISAG-LDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQTAIKYL 733
            VIG E  +Q  E  G  PD++I  VGGGSN  G  + F+     RL G  +  F     K + ++++G    + G   G    L     G   +   I AG L Y GV P  S L   G  E       E   A    ++ EGI+PA E+AHA+ A +++      +G +VV+  N SG G  D+Q   +YL
Sbjct:  245 VIGLEAEKQFREA-GVYPDIMIGAVGGGSNFAGFTYPFIRH---RLKGSSSTRFIAVEPKASPSMTRGVYTYDYGDTAGLTPLLKMHTLGHTYQVPPIHAGGLRYHGVAPTLSVLLKHGIVEARAYHQREVFRAAHMFAKAEGIVPAPESAHAVKAAIDEAIKARDEGRRVVIAFNLSGHGLLDLQGYREYL 432          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_SULTO (Tryptophan synthase beta chain 1 OS=Sulfolobus tokodaii GN=trpB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 60/183 (32.79%), Postives = 90/183 (49.18%), Query Frame = -2
Query:  203 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-DKDVRLIGVEAAGFG-LDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKL--CPTLADGTKVVVNFSGRGDKDV 736
            +VIG E   Q L++ G +PD+LI CVGGGSN  G  + F+   K  + I V AA      +GK+       +   L   +  +   +D   + P   + GL Y GV P  S L  E   E+    ++E  EA K   + +GI+PA E+AHA+ A +++     T  +   +V N SG G  D+
Sbjct:  233 SVIGMEAIAQ-LDELGEEPDILIGCVGGGSNFGGFTYPFIGAKKGKKYIAVGAAEIPKFSTGKYEYDYP--DTAGLLPLVKMITLGKD--YVPPPIYAGGLRYHGVAPTLSLLIKEKIVEWREYKEEEIYEAAKIFMKTQGIVPAPESAHAIKAVIDEALKAKTEKERRVIVFNLSGHGLLDL 410          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_METMA (Tryptophan synthase beta chain 2 OS=Methanosarcina mazei GN=trpB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 61/196 (31.12%), Postives = 94/196 (47.96%), Query Frame = -2
Query:  185 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL-----LQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQTAIKY 733
            VIG E ++Q LE+    PDV+I C GGGSN  G+  EF+ D+     + R++ VE +           +L+KGE     G  + +     +     + I P   + GL Y G  P  S L  EG  E  +    E  +A  + +R EGI+PA E++HA+   +++       G + V+  N SG G  D+ +  KY
Sbjct:  250 VIGAECKKQ-LEQVEEYPDVVIGCCGGGSNLGGIGLEFIKDRLEGKHNARVVAVEPSA--------CPSLTKGEYRYDFGDTAEMTPLLKMYTLGHKHIPPAIHAGGLRYHGDSPIISKLCAEGLMEAVSYGQKEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALEAKQKGEEKVILFNLSGHGHFDMASYDKY 436          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THELT (Tryptophan synthase beta chain OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=trpB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 61/189 (32.28%), Postives = 86/189 (45.50%), Query Frame = -2
Query:  191 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK----DVRLIGVEAAGF-GLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGT---KVVVNFSGRGDKDVQTAI 733
            VIG E ++Q LE  G KPDV++ C GGGSN  G    F+ DK    +++ +  E      L  G++      G+   +   L      +D   I P   + GL Y G  P  S L  EG  E      DE   A K  ++LEGI+PA E+++A+A   +      +      VV N SG G  D+   I
Sbjct:  239 VIGLELKKQ-LEVLGEKPDVILGCHGGGSNFGGTVLPFIPDKLSGKEIKFVACEPTACPSLTRGRY--DYDYGDTAGMTPLLKMYTLGKD--FIPPKIHAGGLRYHGAAPIISRLVKEGLIEAVAFDQDEIFSAAKLFAKLEGIVPAPESSYAIAGAIREAKKAKEHNIPRVVVFNLSGHGLFDLTAYI 422          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11
Identity = 62/191 (32.46%), Postives = 89/191 (46.60%), Query Frame = -2
Query:  185 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL-----LQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL--AYLEKLCPTLADGTKVVV-NFSGRGDKDVQTAIKY 733
            VIG E ++Q L +    PDV+I C GGGSN  G+  EF+ D   RL G  +A           +L+KGE     G  + +     +     + + P   + GL Y G  P  S L  EG  E  +    E  +A  + +R EGI+PA E++HA+  A  E L        K ++ N SG G  D+ +  KY
Sbjct:  250 VIGAECKQQ-LAQVEEYPDVVIGCCGGGSNLGGIGLEFIKD---RLEGKHSARVVAVEPSACPSLTKGEYRYDFGDTAEMTPLLKMYTLGHKHVPPAIHAGGLRYHGDSPIISKLCSEGLMEAVSYDQQEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALAAKQTGEEKTILFNLSGHGHFDMSSYDKY 436          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PYRHO (Tryptophan synthase beta chain OS=Pyrococcus horikoshii GN=trpB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 61/193 (31.61%), Postives = 89/193 (46.11%), Query Frame = -2
Query:  179 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL-----LQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQTAIKYLQ 733
            VIG E ++Q  E    +PDV+I CVGGGSN  GL + F+ D    L G     F     +   T++KG     +G  + L     +         P   + GL Y G+ P  S L + G  +       E  EA    ++ EGI+PA E+AHA+ A ++K       G + V+  N SG G  D++    YL+
Sbjct:  249 VIGLEAKKQVKEF--EEPDVIIGCVGGGSNFAGLSYPFIKDV---LDGKAEYEFIAVEPRAVPTMTKGVYTYDYGDSAGLTPKIKMYTLGHTYYVPPIHAGGLRYHGLAPTLSVLMNHGIVKPMAYHQTEVFEAAVLFAKAEGIVPAPESAHAVRAVIDKALEAKRKGEETVILFNLSGHGLLDLKGYEDYLE 436          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_AQUAE (Tryptophan synthase beta chain 2 OS=Aquifex aeolicus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 67/200 (33.50%), Postives = 91/200 (45.50%), Query Frame = -2
Query:  182 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVND--------KDVRLIGVEAAGFGLDSGKHAATLSKGE----VGVLHGALSYLLQDEDGQIIEPHSISA-GLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL--AYLEKL-CPTLADGTKVVVNFSGRGDKDVQTAIKYL 733
            VIG E ++Q +E+ G  PDV+I  VGGGSN  GL   F+ D        +D++++ VE         +   TL+KGE     G   G    +     G    P  I A GL Y G  P    L + G  +       E  EA    +R EGI+PA E+AHA+  A  E L C    +   ++ N SG G  D+    KYL
Sbjct:  238 VIGLEAKKQ-MEEAGYYPDVIIGAVGGGSNFAGLSFPFLADVLRGDKRKEDLKVLAVEP--------EACPTLTKGEYKYDFGDSVGLTPLIKMYTLGHDFVPSPIHAGGLRYHGDAPLVCKLYNLGYIDAVAYKQTEVFEAAVTFARTEGIVPAPESAHAIKAAIDEALKCKETGEEKVILFNLSGHGYFDLSAYDKYL 428          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEON (Tryptophan synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=trpB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11
Identity = 61/187 (32.62%), Postives = 87/187 (46.52%), Query Frame = -2
Query:  200 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRLIGVE-AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQ 733
            VIG E + Q  E     PDV+I CVGGGSN  GL + FV D+     D   I VE  A   +  G +  T   G+ G L   +          +   H  + GL Y G+ P  S L + G          E  EA +  ++ EGI+PA E+AHA+ A +++      +G + V+  N SG G  D++
Sbjct:  238 VIGLEAKEQMKEF--EDPDVIIGCVGGGSNFAGLAYPFVKDRLDGKADYEFIAVEPRAAPSMTRGVY--TYDYGDSGGLTPKMKMHTLGHTYYVPPIH--AGGLRYHGLAPTLSILINHGIVRPVAYHQTEVFEAARLFAKTEGIVPAPESAHAVKAAIDRALKAKEEGKEEVILFNLSGHGLLDLK 418          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_SULSO (Tryptophan synthase beta chain 2 OS=Sulfolobus solfataricus GN=trpB2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 59/199 (29.65%), Postives = 86/199 (43.22%), Query Frame = -2
Query:  203 FHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGK----HAATLSKGEVGVLHGALSYLLQDE------------DGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTL---ADGTKVVVNFSGRGDKDV 742
            F  + G E ++Q +E  G  PD +I  VGGGSN   L + F+ D+             L SGK    + A+ S     +  G   Y   D                 + P   + GL Y GV P  S L  +G  +  + + +E+ +  K  S LEG IPA ET+HAL  L ++        +   V+V+FSG G  D+
Sbjct:  235 FKTIAGMEAKKQ-MELIGEDPDYIIGVVGGGSNYAALAYPFLGDE-------------LRSGKVRRKYIASGSSEVPKMTKGVYKYDYPDTAKLLPMLKMYTIGSDFVPPPVYAGGLRYHGVAPTLSLLISKGIVQARDYSQEESFKWAKLFSELEGYIPAPETSHALPILAEIAEEAKKSGERKTVLVSFSGHGLLDL 419          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB2_AERPE8.812e-1232.81Tryptophan synthase beta chain 2 OS=Aeropyrum pern... [more]
TRPB1_SULTO1.503e-1132.79Tryptophan synthase beta chain 1 OS=Sulfolobus tok... [more]
TRPB2_METMA1.963e-1131.12Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB_THELT2.564e-1132.28Tryptophan synthase beta chain OS=Thermotoga letti... [more]
TRPB2_METAC2.564e-1132.46Tryptophan synthase beta chain 2 OS=Methanosarcina... [more]
TRPB_PYRHO3.349e-1131.61Tryptophan synthase beta chain OS=Pyrococcus horik... [more]
TRPB2_AQUAE3.349e-1133.50Tryptophan synthase beta chain 2 OS=Aquifex aeolic... [more]
TRPB_THEON5.712e-1132.62Tryptophan synthase beta chain OS=Thermococcus onn... [more]
TRPB2_SULSO9.743e-1129.65Tryptophan synthase beta chain 2 OS=Sulfolobus sol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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