CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_AERPE (Tryptophan synthase beta chain 2 OS=Aeropyrum pernix GN=trpB2 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12 Identity = 63/192 (32.81%), Postives = 89/192 (46.35%), Query Frame = -2 Query: 182 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKG----EVGVLHGALSYLLQDEDGQIIEPHSISAG-LDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQTAIKYL 733 VIG E +Q E G PD++I VGGGSN G + F+ RL G + F K + ++++G + G G L G + I AG L Y GV P S L G E E A ++ EGI+PA E+AHA+ A +++ +G +VV+ N SG G D+Q +YL Sbjct: 245 VIGLEAEKQFREA-GVYPDIMIGAVGGGSNFAGFTYPFIRH---RLKGSSSTRFIAVEPKASPSMTRGVYTYDYGDTAGLTPLLKMHTLGHTYQVPPIHAGGLRYHGVAPTLSVLLKHGIVEARAYHQREVFRAAHMFAKAEGIVPAPESAHAVKAAIDEAIKARDEGRRVVIAFNLSGHGLLDLQGYREYL 432
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_SULTO (Tryptophan synthase beta chain 1 OS=Sulfolobus tokodaii GN=trpB1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11 Identity = 60/183 (32.79%), Postives = 90/183 (49.18%), Query Frame = -2 Query: 203 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-DKDVRLIGVEAAGFG-LDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKL--CPTLADGTKVVVNFSGRGDKDV 736 +VIG E Q L++ G +PD+LI CVGGGSN G + F+ K + I V AA +GK+ + L + + +D + P + GL Y GV P S L E E+ ++E EA K + +GI+PA E+AHA+ A +++ T + +V N SG G D+ Sbjct: 233 SVIGMEAIAQ-LDELGEEPDILIGCVGGGSNFGGFTYPFIGAKKGKKYIAVGAAEIPKFSTGKYEYDYP--DTAGLLPLVKMITLGKD--YVPPPIYAGGLRYHGVAPTLSLLIKEKIVEWREYKEEEIYEAAKIFMKTQGIVPAPESAHAIKAVIDEALKAKTEKERRVIVFNLSGHGLLDL 410
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_METMA (Tryptophan synthase beta chain 2 OS=Methanosarcina mazei GN=trpB2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11 Identity = 61/196 (31.12%), Postives = 94/196 (47.96%), Query Frame = -2 Query: 185 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL-----LQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQTAIKY 733 VIG E ++Q LE+ PDV+I C GGGSN G+ EF+ D+ + R++ VE + +L+KGE G + + + + I P + GL Y G P S L EG E + E +A + +R EGI+PA E++HA+ +++ G + V+ N SG G D+ + KY Sbjct: 250 VIGAECKKQ-LEQVEEYPDVVIGCCGGGSNLGGIGLEFIKDRLEGKHNARVVAVEPSA--------CPSLTKGEYRYDFGDTAEMTPLLKMYTLGHKHIPPAIHAGGLRYHGDSPIISKLCAEGLMEAVSYGQKEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALEAKQKGEEKVILFNLSGHGHFDMASYDKY 436
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THELT (Tryptophan synthase beta chain OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=trpB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11 Identity = 61/189 (32.28%), Postives = 86/189 (45.50%), Query Frame = -2 Query: 191 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK----DVRLIGVEAAGF-GLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGT---KVVVNFSGRGDKDVQTAI 733 VIG E ++Q LE G KPDV++ C GGGSN G F+ DK +++ + E L G++ G+ + L +D I P + GL Y G P S L EG E DE A K ++LEGI+PA E+++A+A + + VV N SG G D+ I Sbjct: 239 VIGLELKKQ-LEVLGEKPDVILGCHGGGSNFGGTVLPFIPDKLSGKEIKFVACEPTACPSLTRGRY--DYDYGDTAGMTPLLKMYTLGKD--FIPPKIHAGGLRYHGAAPIISRLVKEGLIEAVAFDQDEIFSAAKLFAKLEGIVPAPESSYAIAGAIREAKKAKEHNIPRVVVFNLSGHGLFDLTAYI 422
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_METAC (Tryptophan synthase beta chain 2 OS=Methanosarcina acetivorans GN=trpB2 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.564e-11 Identity = 62/191 (32.46%), Postives = 89/191 (46.60%), Query Frame = -2 Query: 185 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL-----LQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL--AYLEKLCPTLADGTKVVV-NFSGRGDKDVQTAIKY 733 VIG E ++Q L + PDV+I C GGGSN G+ EF+ D RL G +A +L+KGE G + + + + + P + GL Y G P S L EG E + E +A + +R EGI+PA E++HA+ A E L K ++ N SG G D+ + KY Sbjct: 250 VIGAECKQQ-LAQVEEYPDVVIGCCGGGSNLGGIGLEFIKD---RLEGKHSARVVAVEPSACPSLTKGEYRYDFGDTAEMTPLLKMYTLGHKHVPPAIHAGGLRYHGDSPIISKLCSEGLMEAVSYDQQEVFDAAVQFARTEGIVPAPESSHAIRCAIDEALAAKQTGEEKTILFNLSGHGHFDMSSYDKY 436
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PYRHO (Tryptophan synthase beta chain OS=Pyrococcus horikoshii GN=trpB PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11 Identity = 61/193 (31.61%), Postives = 89/193 (46.11%), Query Frame = -2 Query: 179 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL-----LQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQTAIKYLQ 733 VIG E ++Q E +PDV+I CVGGGSN GL + F+ D L G F + T++KG +G + L + P + GL Y G+ P S L + G + E EA ++ EGI+PA E+AHA+ A ++K G + V+ N SG G D++ YL+ Sbjct: 249 VIGLEAKKQVKEF--EEPDVIIGCVGGGSNFAGLSYPFIKDV---LDGKAEYEFIAVEPRAVPTMTKGVYTYDYGDSAGLTPKIKMYTLGHTYYVPPIHAGGLRYHGLAPTLSVLMNHGIVKPMAYHQTEVFEAAVLFAKAEGIVPAPESAHAVRAVIDKALEAKRKGEETVILFNLSGHGLLDLKGYEDYLE 436
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_AQUAE (Tryptophan synthase beta chain 2 OS=Aquifex aeolicus GN=trpB2 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11 Identity = 67/200 (33.50%), Postives = 91/200 (45.50%), Query Frame = -2 Query: 182 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVND--------KDVRLIGVEAAGFGLDSGKHAATLSKGE----VGVLHGALSYLLQDEDGQIIEPHSISA-GLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL--AYLEKL-CPTLADGTKVVVNFSGRGDKDVQTAIKYL 733 VIG E ++Q +E+ G PDV+I VGGGSN GL F+ D +D++++ VE + TL+KGE G G + G P I A GL Y G P L + G + E EA +R EGI+PA E+AHA+ A E L C + ++ N SG G D+ KYL Sbjct: 238 VIGLEAKKQ-MEEAGYYPDVIIGAVGGGSNFAGLSFPFLADVLRGDKRKEDLKVLAVEP--------EACPTLTKGEYKYDFGDSVGLTPLIKMYTLGHDFVPSPIHAGGLRYHGDAPLVCKLYNLGYIDAVAYKQTEVFEAAVTFARTEGIVPAPESAHAIKAAIDEALKCKETGEEKVILFNLSGHGYFDLSAYDKYL 428
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_THEON (Tryptophan synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=trpB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.712e-11 Identity = 61/187 (32.62%), Postives = 87/187 (46.52%), Query Frame = -2 Query: 200 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDK-----DVRLIGVE-AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL-AYLEKLCPTLADGTKVVV--NFSGRGDKDVQ 733 VIG E + Q E PDV+I CVGGGSN GL + FV D+ D I VE A + G + T G+ G L + + H + GL Y G+ P S L + G E EA + ++ EGI+PA E+AHA+ A +++ +G + V+ N SG G D++ Sbjct: 238 VIGLEAKEQMKEF--EDPDVIIGCVGGGSNFAGLAYPFVKDRLDGKADYEFIAVEPRAAPSMTRGVY--TYDYGDSGGLTPKMKMHTLGHTYYVPPIH--AGGLRYHGLAPTLSILINHGIVRPVAYHQTEVFEAARLFAKTEGIVPAPESAHAVKAAIDRALKAKEEGKEEVILFNLSGHGLLDLK 418
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB2_SULSO (Tryptophan synthase beta chain 2 OS=Sulfolobus solfataricus GN=trpB2 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11 Identity = 59/199 (29.65%), Postives = 86/199 (43.22%), Query Frame = -2 Query: 203 FHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGK----HAATLSKGEVGVLHGALSYLLQDE------------DGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTL---ADGTKVVVNFSGRGDKDV 742 F + G E ++Q +E G PD +I VGGGSN L + F+ D+ L SGK + A+ S + G Y D + P + GL Y GV P S L +G + + + +E+ + K S LEG IPA ET+HAL L ++ + V+V+FSG G D+ Sbjct: 235 FKTIAGMEAKKQ-MELIGEDPDYIIGVVGGGSNYAALAYPFLGDE-------------LRSGKVRRKYIASGSSEVPKMTKGVYKYDYPDTAKLLPMLKMYTIGSDFVPPPVYAGGLRYHGVAPTLSLLISKGIVQARDYSQEESFKWAKLFSELEGYIPAPETSHALPILAEIAEEAKKSGERKTVLVSFSGHGLLDL 419 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |