CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_STRAW (Tryptophan synthase beta chain OS=Streptomyces avermitilis GN=trpB PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.260e-65
Identity = 120/192 (62.50%), Postives = 148/192 (77.08%), Query Frame = -2
Query:  185 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 760
            P MVRDFH VIG E RRQ LE+ G  PD  +ACVGGGSNA+GLFH F+ D  VRLIG E AG GL++G+HAATL+ GE G+LHG+ SY+LQD++GQI EP+SISAGLDYPG+GPEH++LKD GR EY  VTDD A++A +  SR EGIIPA+E+AHALA   ++   L     ++VN SGRGDKD+ TA +Y
Sbjct:  211 PAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDTGVRLIGCEPAGHGLETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALEIGKELGKDGLILVNLSGRGDKDMDTAARY 402          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_STRGG (Tryptophan synthase beta chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=trpB PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.870e-65
Identity = 120/192 (62.50%), Postives = 148/192 (77.08%), Query Frame = -2
Query:  185 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 760
            P MVRDFH VIG E RRQ LE+ G  PD  +ACVGGGSNA+GLFH F+ D+ VRL+G E AG G+++G+HAATL+ GE G+LHG+ SY+LQD++GQI EP+SISAGLDYPG+GPEHS+LKD GR EY  VTDD A++A +  SR EGIIPA+E+AHALA    L   L     ++VN SGRGDKD+ TA +Y
Sbjct:  211 PAMVRDFHRVIGVEARRQILERAGRLPDAAVACVGGGSNAIGLFHAFIPDEGVRLVGCEPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHSYLKDVGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGKELGKDGLILVNLSGRGDKDMDTAARY 402          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_CAUCR (Tryptophan synthase beta chain OS=Caulobacter crescentus GN=trpB PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.870e-65
Identity = 124/193 (64.25%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P+MVRDF +VIG E R Q LE  G  PD ++AC+GGGSNA+GLFH F+ D+ VRLIGVEAAG G+ + KHAA+L+ G  GVLHG  +YLLQD+DGQII+ HSISAGLDYPG+GPEHSFL D GRAEY + TD EALEAFK  S LEGIIPALE AHALA + ++   L  G  VV+N  GRGDKD+ T  + L
Sbjct:  210 PVMVRDFQSVIGAEAREQILEMEGRLPDAVVACIGGGSNAIGLFHPFLGDEGVRLIGVEAAGHGVSTDKHAASLTGGRPGVLHGNRTYLLQDDDGQIIDAHSISAGLDYPGIGPEHSFLHDIGRAEYVSTTDTEALEAFKLCSTLEGIIPALEPAHALARVGEIAQELGKGKIVVMNLCGRGDKDIFTVAEAL 402          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_DECAR (Tryptophan synthase beta chain OS=Dechloromonas aromatica (strain RCB) GN=trpB PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.972e-65
Identity = 122/188 (64.89%), Postives = 149/188 (79.26%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760
            PM+VRDF  +IG+E   Q  E  G +PD +IACVGGGSNAMG+F+ ++N + VRLIGVEAAG G+++G+H+A+L+ G  GVLHG  +YLLQDEDGQIIE HS+SAGLDYPGVGPEH++LKD GRAEY  VTD EAL AF    R+EGIIPALE++HALAY  KL PTLA    ++VN SGRGDKD+ T
Sbjct:  203 PMLVRDFQKIIGEECLVQMPEMTGRQPDAVIACVGGGSNAMGIFYPYINVEGVRLIGVEAAGDGMETGRHSASLTAGVPGVLHGNRTYLLQDEDGQIIETHSVSAGLDYPGVGPEHAWLKDLGRAEYQPVTDSEALAAFHTLCRIEGIIPALESSHALAYAAKLAPTLAKDKILLVNLSGRGDKDMHT 390          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ACICA (Tryptophan synthase beta chain OS=Acinetobacter calcoaceticus GN=trpB PE=3 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 8.972e-65
Identity = 115/191 (60.21%), Postives = 149/191 (78.01%), Query Frame = -2
Query:  188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 760
            P +VRDF ++IG+E RRQ  E+ G  PD L+ACVGGGSNA+GLF+ F+ND+DV++ GVEAAG G+++GKH+A L+ G VGVLHG  +YL+ D  GQIIE HSISAGLDYPGVGPEHSFLKD  R EY  + D+EAL+ F+  +R+EGIIPA+E+AHA+AY+ KL PT+     ++ N SGRGDKD+ T  +
Sbjct:  204 PQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFLNDQDVKMYGVEAAGHGIETGKHSAPLNAGHVGVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTVAR 394          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ACIAD (Tryptophan synthase beta chain OS=Acinetobacter sp. (strain ADP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.972e-65
Identity = 115/191 (60.21%), Postives = 149/191 (78.01%), Query Frame = -2
Query:  188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 760
            P +VRDF ++IG+E RRQ  E+ G  PD L+ACVGGGSNA+GLF+ F+ND+DV++ GVEAAG G+++GKH+A L+ G VGVLHG  +YL+ D  GQIIE HSISAGLDYPGVGPEHSFLKD  R EY  + D+EAL+ F+  +R+EGIIPA+E+AHA+AY+ KL PT+     ++ N SGRGDKD+ T  +
Sbjct:  204 PQLVRDFQSIIGREARRQIQEQAGRLPDALVACVGGGSNAIGLFYPFLNDQDVKMYGVEAAGHGIETGKHSAPLNAGHVGVLHGNRTYLMSDPQGQIIETHSISAGLDYPGVGPEHSFLKDMHRVEYVPIDDNEALQGFRDLTRIEGIIPAIESAHAMAYVTKLAPTMDKDQIIIANVSGRGDKDLMTVAR 394          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_NITMU (Tryptophan synthase beta chain OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=trpB PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.172e-64
Identity = 118/191 (61.78%), Postives = 150/191 (78.53%), Query Frame = -2
Query:  188 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIK 760
            PMMVRDF A+IG+E   Q  E +G +PD LIACVGGGSNA+GLF+ ++ D  +R+IGVEAAG G+++ +HAATL+KG  GVLHG  +YL+QDE+GQI+E HSISAGLDYPGVGPEH++LKD GRAEY+ +TD++ALEAF      EGIIPALE++HALAY  +L P L     ++VN SGRGDKD+ T  +
Sbjct:  203 PMMVRDFQAIIGREAITQMQEDYGRQPDALIACVGGGSNAIGLFYPYL-DSSIRMIGVEAAGHGVETDQHAATLTKGRPGVLHGNRTYLIQDENGQIVETHSISAGLDYPGVGPEHAWLKDSGRAEYFGITDEQALEAFHALCHYEGIIPALESSHALAYAARLAPALTSDKLLLVNLSGRGDKDMPTVAR 392          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSESH (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. phaseolicola GN=trpB PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.999e-64
Identity = 123/193 (63.73%), Postives = 146/193 (75.65%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF A+IGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F++D  V +IGVEA G G+D+ KHAA+L+ G  GVLHG  +YLLQD DGQI +PHSISAGLDYPG+GPEH+FL +  R EY ++TDDEAL+AF +   LEGIIPALETAHALA   K    L D   +VV  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQAIIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDGDGQITDPHSISAGLDYPGIGPEHAFLHEVKRVEYVSITDDEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRKO (Tryptophan synthase beta chain 1 OS=Pyrococcus kodakaraensis GN=trpB1 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.999e-64
Identity = 119/186 (63.98%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760
            P++VRDF +VIG+E R Q LE  G  PD ++ACVGGGSNAMG+F+ FVND+ VRLIGVEA G GL++G HAA+L+ GE+GV HG LSY LQ+E+GQI   HS+SAGLDYPGVGPEH++LKD GRAEY  VTD+EAL AF   SR EGI+PALE+AHA+AY  K+ P +     ++VN SGRGDKD+
Sbjct:  196 PVIVRDFQSVIGREAREQILEAEGTLPDAVVACVGGGSNAMGIFYPFVNDR-VRLIGVEAGGKGLETGLHAASLNAGELGVFHGMLSYFLQNEEGQITPTHSVSAGLDYPGVGPEHAYLKDSGRAEYVTVTDEEALRAFHELSRTEGILPALESAHAVAYAMKIAPEMDKDEIIIVNLSGRGDKDL 380          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACC3 (Tryptophan synthase beta chain OS=Bacillus cereus (strain 03BB102) GN=trpB PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.610e-64
Identity = 117/194 (60.31%), Postives = 155/194 (79.90%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P +VRDF +VIG ET++Q  E  G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL P + +   +V+  SGRGDKDV++  +Y++
Sbjct:  202 PQIVRDFQSVIGNETKKQYEELEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKEDEGLVICLSGRGDKDVESIKRYME 395          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB_STRAW5.260e-6562.50Tryptophan synthase beta chain OS=Streptomyces ave... [more]
TRPB_STRGG6.870e-6562.50Tryptophan synthase beta chain OS=Streptomyces gri... [more]
TRPB_CAUCR6.870e-6564.25Tryptophan synthase beta chain OS=Caulobacter cres... [more]
TRPB_DECAR8.972e-6564.89Tryptophan synthase beta chain OS=Dechloromonas ar... [more]
TRPB_ACICA8.972e-6560.21Tryptophan synthase beta chain OS=Acinetobacter ca... [more]
TRPB_ACIAD8.972e-6560.21Tryptophan synthase beta chain OS=Acinetobacter sp... [more]
TRPB_NITMU1.172e-6461.78Tryptophan synthase beta chain OS=Nitrosospira mul... [more]
TRPB_PSESH1.999e-6463.73Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB1_PYRKO1.999e-6463.98Tryptophan synthase beta chain 1 OS=Pyrococcus kod... [more]
TRPB_BACC32.610e-6460.31Tryptophan synthase beta chain OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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