CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.770e-63
Identity = 113/194 (58.25%), Postives = 152/194 (78.35%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P +V+DF  +IG+E R+Q L+  G  PD ++ACVGGGSN+MG+F+ F+ D+ V+LIGVEAAG G+D+  HAATL+KG VG++HG ++Y+LQDEDGQI   +S+SAGLDYPGVGP+HS+LK++ RA Y  VTD EAL+AF   S  EGIIPALE++HA+AY  KL P+L+    V++N SGRGDKDV T +K ++
Sbjct:  195 PTIVKDFQKIIGEEARKQILKAEGRLPDYVVACVGGGSNSMGIFYPFIKDEGVKLIGVEAAGLGIDTPMHAATLTKGSVGIIHGMMTYVLQDEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVAYAMKLAPSLSKDEIVIINLSGRGDKDVNTVMKNME 388          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.770e-63
Identity = 117/193 (60.62%), Postives = 145/193 (75.13%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF  +IG E + Q LEK G  P+ L+ACVGGGSNAMGLF+ F  D+ V L GVEAAG G+++ +HAAT++KG +GV+HG ++YLLQDE GQI   HSISAGLDYPG+GPEH++    GRA Y  +TD+EALEAF+  +RLEGIIPALE+AHA+AYL KL P       +V+N SGRGDKD+ T  K L
Sbjct:  201 PTMVRDFQRIIGDEVKEQILEKEGRLPNYLVACVGGGSNAMGLFYPFYEDEAVALYGVEAAGLGVETDQHAATITKGSMGVIHGMMTYLLQDEQGQITPVHSISAGLDYPGIGPEHAYYHHTGRANYVAITDEEALEAFQLLTRLEGIIPALESAHAIAYLMKLAPKTKGDDIIVLNLSGRGDKDIHTISKLL 393          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ACICJ (Tryptophan synthase beta chain OS=Acidiphilium cryptum (strain JF-5) GN=trpB PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.770e-63
Identity = 120/193 (62.18%), Postives = 149/193 (77.20%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF +VIG E R Q +E  G  PDV IA +GGGSNA+GLFH F+ D+ V+LIGVEAAG GLDSG+HAA+LS+G  GVLHG  +YLLQD+DGQI+E HSISAGLDYPG+GPEHS+L D GR EY + TDDEAL AF+   R EGIIPALE +HALA++ K+ P +   + +++N  GRGDKD+ T  ++L
Sbjct:  209 PAMVRDFQSVIGVEARAQMMEAEGRLPDVAIAAIGGGSNAIGLFHAFL-DEQVKLIGVEAAGRGLDSGEHAASLSRGRPGVLHGNRTYLLQDDDGQILEAHSISAGLDYPGIGPEHSYLHDIGRVEYVSATDDEALAAFQLCCRTEGIIPALEPSHALAHVAKIAPGMDKESIILMNLCGRGDKDIFTVARHL 400          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPU (Tryptophan synthase beta chain OS=Pseudomonas putida GN=trpB PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.923e-63
Identity = 119/193 (61.66%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ +  V++IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQDEDGQI + HSISAGLDYPG+GPEH++L +  R EY ++TDDEAL+AF  + RLEGIIPALE++HALA   K  P L     +VV  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDEDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEE4 (Tryptophan synthase beta chain OS=Pseudomonas entomophila (strain L48) GN=trpB PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.430e-63
Identity = 118/193 (61.14%), Postives = 148/193 (76.68%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF ++IGKETR Q  EK G  PD LIACVGGGSNAMGLFH+F++D  V++IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQD+DGQI + HSISAGLDYPG+GPEH++L +  R EY ++TDDEAL+AF  + RLEGIIPALE++HALA   K  P L     +V+  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHDFLDDASVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDDDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVICLSGRGDKDMQTVMNHM 398          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.398e-63
Identity = 115/194 (59.28%), Postives = 153/194 (78.87%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TD+EALEAF+  ++ EGIIPALE++HA+AY  KL P +     +V+  SGRGDKDV++  +Y++
Sbjct:  202 PQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.398e-63
Identity = 115/194 (59.28%), Postives = 153/194 (78.87%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TD+EALEAF+  ++ EGIIPALE++HA+AY  KL P +     +V+  SGRGDKDV++  +Y++
Sbjct:  202 PQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSESM (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. tomato GN=trpB PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62
Identity = 120/193 (62.18%), Postives = 145/193 (75.13%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF +VIGKET+ Q  EK G  PD LIACVGGGSNAMGLFH F++D  V +IGVEA G G+D+ KHAA+L+ G  GVLHG  +YLLQD DGQI + HSISAGLDYPG+GPEH++L +  R EY ++TD+EAL+AF +   LEGIIPALETAHALA   K    L D   +VV  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQSVIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDNDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDEEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPK (Tryptophan synthase beta chain OS=Pseudomonas putida (strain KT2440) GN=trpB PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62
Identity = 118/193 (61.14%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ +  V++IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQD+DGQI + HSISAGLDYPG+GPEH++L +  R EY ++TDDEAL+AF  + RLEGIIPALE++HALA   K  P L     +VV  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDQDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEP1 (Tryptophan synthase beta chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpB PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62
Identity = 118/193 (61.14%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ +  V++IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQD+DGQI + HSISAGLDYPG+GPEH++L +  R EY ++TDDEAL+AF  + RLEGIIPALE++HALA   K  P L     +VV  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDQDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB_CLOAB3.770e-6358.25Tryptophan synthase beta chain OS=Clostridium acet... [more]
TRPB_ALKMQ3.770e-6360.62Tryptophan synthase beta chain OS=Alkaliphilus met... [more]
TRPB_ACICJ3.770e-6362.18Tryptophan synthase beta chain OS=Acidiphilium cry... [more]
TRPB_PSEPU4.923e-6361.66Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEE46.430e-6361.14Tryptophan synthase beta chain OS=Pseudomonas ento... [more]
TRPB_BACCR8.398e-6359.28Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC48.398e-6359.28Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PSESM1.097e-6262.18Tryptophan synthase beta chain OS=Pseudomonas syri... [more]
TRPB_PSEPK1.097e-6261.14Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PSEP11.097e-6261.14Tryptophan synthase beta chain OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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