CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.770e-63 Identity = 113/194 (58.25%), Postives = 152/194 (78.35%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P +V+DF +IG+E R+Q L+ G PD ++ACVGGGSN+MG+F+ F+ D+ V+LIGVEAAG G+D+ HAATL+KG VG++HG ++Y+LQDEDGQI +S+SAGLDYPGVGP+HS+LK++ RA Y VTD EAL+AF S EGIIPALE++HA+AY KL P+L+ V++N SGRGDKDV T +K ++ Sbjct: 195 PTIVKDFQKIIGEEARKQILKAEGRLPDYVVACVGGGSNSMGIFYPFIKDEGVKLIGVEAAGLGIDTPMHAATLTKGSVGIIHGMMTYVLQDEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKAFLYLSEKEGIIPALESSHAVAYAMKLAPSLSKDEIVIINLSGRGDKDVNTVMKNME 388
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ALKMQ (Tryptophan synthase beta chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=trpB PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.770e-63 Identity = 117/193 (60.62%), Postives = 145/193 (75.13%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF +IG E + Q LEK G P+ L+ACVGGGSNAMGLF+ F D+ V L GVEAAG G+++ +HAAT++KG +GV+HG ++YLLQDE GQI HSISAGLDYPG+GPEH++ GRA Y +TD+EALEAF+ +RLEGIIPALE+AHA+AYL KL P +V+N SGRGDKD+ T K L Sbjct: 201 PTMVRDFQRIIGDEVKEQILEKEGRLPNYLVACVGGGSNAMGLFYPFYEDEAVALYGVEAAGLGVETDQHAATITKGSMGVIHGMMTYLLQDEQGQITPVHSISAGLDYPGIGPEHAYYHHTGRANYVAITDEEALEAFQLLTRLEGIIPALESAHAIAYLMKLAPKTKGDDIIVLNLSGRGDKDIHTISKLL 393
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_ACICJ (Tryptophan synthase beta chain OS=Acidiphilium cryptum (strain JF-5) GN=trpB PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 3.770e-63 Identity = 120/193 (62.18%), Postives = 149/193 (77.20%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF +VIG E R Q +E G PDV IA +GGGSNA+GLFH F+ D+ V+LIGVEAAG GLDSG+HAA+LS+G GVLHG +YLLQD+DGQI+E HSISAGLDYPG+GPEHS+L D GR EY + TDDEAL AF+ R EGIIPALE +HALA++ K+ P + + +++N GRGDKD+ T ++L Sbjct: 209 PAMVRDFQSVIGVEARAQMMEAEGRLPDVAIAAIGGGSNAIGLFHAFL-DEQVKLIGVEAAGRGLDSGEHAASLSRGRPGVLHGNRTYLLQDDDGQILEAHSISAGLDYPGIGPEHSYLHDIGRVEYVSATDDEALAAFQLCCRTEGIIPALEPSHALAHVAKIAPGMDKESIILMNLCGRGDKDIFTVARHL 400
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPU (Tryptophan synthase beta chain OS=Pseudomonas putida GN=trpB PE=3 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 4.923e-63 Identity = 119/193 (61.66%), Postives = 147/193 (76.17%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF ++IGKETR Q EK G PD L+ACVGGGSNAMGLFHEF+ + V++IGVEA G G+ + KHAA+L+ G GVLHG +YLLQDEDGQI + HSISAGLDYPG+GPEH++L + R EY ++TDDEAL+AF + RLEGIIPALE++HALA K P L +VV SGRGDKD+QT + ++ Sbjct: 206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDEDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEE4 (Tryptophan synthase beta chain OS=Pseudomonas entomophila (strain L48) GN=trpB PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 6.430e-63 Identity = 118/193 (61.14%), Postives = 148/193 (76.68%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF ++IGKETR Q EK G PD LIACVGGGSNAMGLFH+F++D V++IGVEA G G+ + KHAA+L+ G GVLHG +YLLQD+DGQI + HSISAGLDYPG+GPEH++L + R EY ++TDDEAL+AF + RLEGIIPALE++HALA K P L +V+ SGRGDKD+QT + ++ Sbjct: 206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLIACVGGGSNAMGLFHDFLDDASVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDDDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVICLSGRGDKDMQTVMNHM 398
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 8.398e-63 Identity = 115/194 (59.28%), Postives = 153/194 (78.87%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P +VRDF +VIG ET++Q G P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR Y+++TD+EALEAF+ ++ EGIIPALE++HA+AY KL P + +V+ SGRGDKDV++ +Y++ Sbjct: 202 PQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 8.398e-63 Identity = 115/194 (59.28%), Postives = 153/194 (78.87%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P +VRDF +VIG ET++Q G P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR Y+++TD+EALEAF+ ++ EGIIPALE++HA+AY KL P + +V+ SGRGDKDV++ +Y++ Sbjct: 202 PQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEAFQLLTKKEGIIPALESSHAVAYALKLAPQMKKDEGLVICLSGRGDKDVESIKRYME 395
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSESM (Tryptophan synthase beta chain OS=Pseudomonas syringae pv. tomato GN=trpB PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62 Identity = 120/193 (62.18%), Postives = 145/193 (75.13%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF +VIGKET+ Q EK G PD LIACVGGGSNAMGLFH F++D V +IGVEA G G+D+ KHAA+L+ G GVLHG +YLLQD DGQI + HSISAGLDYPG+GPEH++L + R EY ++TD+EAL+AF + LEGIIPALETAHALA K L D +VV SGRGDKD+QT + ++ Sbjct: 206 PAMVRDFQSVIGKETKEQMQEKEGRLPDSLIACVGGGSNAMGLFHPFLDDASVEIIGVEAGGHGVDTDKHAASLNGGVPGVLHGNRTYLLQDNDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDEEALDAFHQCCLLEGIIPALETAHALAEAMKRATNLRDDHLMVVCLSGRGDKDMQTVMNHM 398
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPK (Tryptophan synthase beta chain OS=Pseudomonas putida (strain KT2440) GN=trpB PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62 Identity = 118/193 (61.14%), Postives = 147/193 (76.17%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF ++IGKETR Q EK G PD L+ACVGGGSNAMGLFHEF+ + V++IGVEA G G+ + KHAA+L+ G GVLHG +YLLQD+DGQI + HSISAGLDYPG+GPEH++L + R EY ++TDDEAL+AF + RLEGIIPALE++HALA K P L +VV SGRGDKD+QT + ++ Sbjct: 206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDQDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEP1 (Tryptophan synthase beta chain OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=trpB PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.097e-62 Identity = 118/193 (61.14%), Postives = 147/193 (76.17%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF ++IGKETR Q EK G PD L+ACVGGGSNAMGLFHEF+ + V++IGVEA G G+ + KHAA+L+ G GVLHG +YLLQD+DGQI + HSISAGLDYPG+GPEH++L + R EY ++TDDEAL+AF + RLEGIIPALE++HALA K P L +VV SGRGDKD+QT + ++ Sbjct: 206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDQDGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |