CF836273

Overview
NameCF836273
Unique NameCF836273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LISIN (Tryptophan synthase beta chain OS=Listeria innocua GN=trpB PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.432e-62
Identity = 116/186 (62.37%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760
            P +VRD+ +VIG E R+Q LEK G  P+ ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL++  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRAEY++VTDDEA+EAF+   R EGIIPALE++HA++Y  KL   +     +VV  SGRGDKDV
Sbjct:  202 PEIVRDYQSVIGTEARKQHLEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPDESMVVCLSGRGDKDV 387          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.871e-62
Identity = 118/189 (62.43%), Postives = 145/189 (76.72%), Query Frame = -2
Query:  197 PMMVRDFHAVIGKETRRQALEKWGGK-PDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760
            PMMVRDF +VIG E   Q  E   G+ PD ++ACVGGGSNAMG+FH ++  ++ RLIGVEAAG GLDSGKH+A+L +G  GVLHG  +Y+LQ++DGQ+ E HSISAGLDYPGVGPEH++LKD GRAEY  +TD EAL+AF    R EGIIPALE+AHA+AY  KL  T+     ++VN SGRGDKD+ T
Sbjct:  203 PMMVRDFQSVIGTECLSQMPEMNAGRQPDAVVACVGGGSNAMGIFHPYIAHENTRLIGVEAAGEGLDSGKHSASLQRGLPGVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGT 391          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.871e-62
Identity = 115/194 (59.28%), Postives = 153/194 (78.87%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P +VRDF +VIGKET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + +HAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEAF+  ++ EGIIPALE++HA+AY  KL   +     +V+  SGRGDKDV++  +Y++
Sbjct:  202 PQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEQHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAAQMKKDEGLVICLSGRGDKDVESIKRYME 395          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPG (Tryptophan synthase beta chain OS=Pseudomonas putida (strain GB-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.443e-62
Identity = 118/193 (61.14%), Postives = 146/193 (75.65%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P MVRDF ++IGKETR Q  EK G  PD L+ACVGGGSNAMGLFHEF+ +  V++IGVEA G G+ + KHAA+L+ G  GVLHG  +YLLQD DGQI + HSISAGLDYPG+GPEH++L +  R EY ++TDDEAL+AF  + RLEGIIPALE++HALA   K  P L     +VV  SGRGDKD+QT + ++
Sbjct:  206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDADGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PARL1 (Tryptophan synthase beta chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpB PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.443e-62
Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = -2
Query:  176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760
            P MVRDF +VIG+ET++Q LE+ G  PD L+AC+GGGSNAMGLFH F++D  V++ GVEAAG GL++G+H A+L  G  GVLHG  +YLLQD+DGQI + HSISAGLDYPG+GPEH++L + GRAEY + TD EAL AF+  S+LEGIIPALE AHALA++ K+   L     +V+N  GRGDKDV     +L V
Sbjct:  209 PAMVRDFQSVIGEETKKQMLEREGRLPDSLVACIGGGSNAMGLFHPFLDDPSVKIYGVEAAGHGLETGEHCASLKGGAPGVLHGNRTYLLQDDDGQIKDGHSISAGLDYPGIGPEHAWLHETGRAEYVSATDREALAAFQLCSKLEGIIPALEPAHALAFVTKIASALPKDHLMVMNMCGRGDKDVFAVADHLGV 403          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.191e-62
Identity = 118/194 (60.82%), Postives = 146/194 (75.26%), Query Frame = -2
Query:  179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760
            P MV+ F  +IG E + Q LEK    PD +IACVGGGSNA+G+F  F+NDK+V+LIGVE AG GL++ KH ATL+KG VG+LHG  +YLLQD++GQI E HSISAGLDYPGVGPEHS+LK+ GRA Y + +D EALEAFK   + EGIIPALE++HALAY  KL     + + +VVN SGRGDKD+ T    L+
Sbjct:  196 PTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYNALK 389          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.443e-62
Identity = 115/186 (61.83%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760
            P +VRD+ +VIG E R+Q +EK G  P+ ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL++  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRAEY++VTDDEA+EAF+   R EGIIPALE++HA++Y  KL   +     +VV  SGRGDKDV
Sbjct:  202 PEIVRDYQSVIGIEARKQHMEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDV 387          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LISMO (Tryptophan synthase beta chain OS=Listeria monocytogenes GN=trpB PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.109e-62
Identity = 116/186 (62.37%), Postives = 147/186 (79.03%), Query Frame = -2
Query:  203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760
            P +VRD+ +VIG E R+Q LEK G  PD ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL++  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRA Y++VTDDEA+EAF+   R EGIIPALE++HA++Y  KL   +     +VV  SGRGDKDV
Sbjct:  202 PEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDASVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDV 387          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BRUSU (Tryptophan synthase beta chain OS=Brucella suis GN=trpB PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.109e-62
Identity = 114/193 (59.07%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL+  +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  210 PELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402          
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BRUME (Tryptophan synthase beta chain OS=Brucella melitensis GN=trpB PE=3 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 7.109e-62
Identity = 114/193 (59.07%), Postives = 147/193 (76.17%), Query Frame = -2
Query:  182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760
            P +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL+  +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+AF+  +R EGIIPALE+AHA+A   K+ PT+     ++VN SGRGDKDV T  K L
Sbjct:  210 PELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402          
The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 449
Match NameE-valueIdentityDescription
TRPB_LISIN1.432e-6262.37Tryptophan synthase beta chain OS=Listeria innocua... [more]
TRPB_POLNA1.871e-6262.43Tryptophan synthase beta chain OS=Polaromonas naph... [more]
TRPB_BACC11.871e-6259.28Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_PSEPG2.443e-6261.14Tryptophan synthase beta chain OS=Pseudomonas puti... [more]
TRPB_PARL12.443e-6260.00Tryptophan synthase beta chain OS=Parvibaculum lav... [more]
TRPB_HELPY3.191e-6260.82Tryptophan synthase beta chain OS=Helicobacter pyl... [more]
TRPB_LISW65.443e-6261.83Tryptophan synthase beta chain OS=Listeria welshim... [more]
TRPB_LISMO7.109e-6262.37Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_BRUSU7.109e-6259.07Tryptophan synthase beta chain OS=Brucella suis GN... [more]
TRPB_BRUME7.109e-6259.07Tryptophan synthase beta chain OS=Brucella meliten... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTAGAGCAATAGATGTAATATATAAAGTTTTACCTTTAAAAAC
ATAAGATGGTTCTCACATCTCTGAAATAACCCTTGATACAAAATTCAAAA
ACAGAAGCTCAAGCAACCCATTTATTTGTTTTCAGTAAATGAATCATATA
TTGCCGGTAACAAGCATTACCATCAAACTTGCAAATATTTGATCGCTGTC
TGGACATCCTTGTCACCTCTGCCACTGAAGTTAACCACAACCTTAGTACC
ATCAGCAAGAGTTGGGCATAGCTTCTCCAAATAAGCCAATGCATGAGCAG
TCTCCAAAGCTGGGATTATACCCTCTAGCCGTGATGACCTCTTGAAAGCT
TCCAATGCTTCATCATCTGTGACATTATAGTACTCAGCACGCCCTTCATC
TTTCAGAAAACTATGCTCAGGTCCAACTCCAGGGTAATCTAAGCCTGCAC
TAATGGAGTGTGGCTCAATTATTTGCCCATCTTCATCCTGCAGCAAATAG
CTCAAAGCACCATGCAACACCCCAACTTCTCCTTTGGACAAGGTAGCAGC
GTGTTTGCCACTGTCTAGACCAAAACCTGCTGCCTCCACACCAATCAACC
TAACATCCTTGTCATTAACAAATTCGTGGAAGAGACCCATGGCATTTGAA
CCACCACCAACGCATGCAATCAGCACATCTGGTTTCCCACCCCATTTCTC
CAATGCTTGTCTTCTTGTTTCTTTTCCAATCACAGCATGGAAATCTCTGA
CCATCATGGGG
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