CF836273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LISIN (Tryptophan synthase beta chain OS=Listeria innocua GN=trpB PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.432e-62 Identity = 116/186 (62.37%), Postives = 148/186 (79.57%), Query Frame = -2 Query: 203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760 P +VRD+ +VIG E R+Q LEK G P+ ++ACVGGGSNAMGLF+ FV+D V++ GVEAAG GL++ HAAT+SKGE+G+LHGA+ +LQDE+GQI+E SISAGLDYPG+GPEHSF +D GRAEY++VTDDEA+EAF+ R EGIIPALE++HA++Y KL + +VV SGRGDKDV Sbjct: 202 PEIVRDYQSVIGTEARKQHLEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPDESMVVCLSGRGDKDV 387
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_POLNA (Tryptophan synthase beta chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=trpB PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.871e-62 Identity = 118/189 (62.43%), Postives = 145/189 (76.72%), Query Frame = -2 Query: 197 PMMVRDFHAVIGKETRRQALEKWGGK-PDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQT 760 PMMVRDF +VIG E Q E G+ PD ++ACVGGGSNAMG+FH ++ ++ RLIGVEAAG GLDSGKH+A+L +G GVLHG +Y+LQ++DGQ+ E HSISAGLDYPGVGPEH++LKD GRAEY +TD EAL+AF R EGIIPALE+AHA+AY KL T+ ++VN SGRGDKD+ T Sbjct: 203 PMMVRDFQSVIGTECLSQMPEMNAGRQPDAVVACVGGGSNAMGIFHPYIAHENTRLIGVEAAGEGLDSGKHSASLQRGLPGVLHGNRTYVLQNDDGQVTETHSISAGLDYPGVGPEHAYLKDIGRAEYVGITDTEALQAFHYLCRTEGIIPALESAHAVAYAMKLAKTMRSDQSILVNLSGRGDKDIGT 391
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BACC1 (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 10987) GN=trpB PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.871e-62 Identity = 115/194 (59.28%), Postives = 153/194 (78.87%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P +VRDF +VIGKET++Q G P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + +HAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR Y+++TDDEALEAF+ ++ EGIIPALE++HA+AY KL + +V+ SGRGDKDV++ +Y++ Sbjct: 202 PQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEQHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEAFQLLTKKEGIIPALESSHAVAYALKLAAQMKKDEGLVICLSGRGDKDVESIKRYME 395
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PSEPG (Tryptophan synthase beta chain OS=Pseudomonas putida (strain GB-1) GN=trpB PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.443e-62 Identity = 118/193 (61.14%), Postives = 146/193 (75.65%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P MVRDF ++IGKETR Q EK G PD L+ACVGGGSNAMGLFHEF+ + V++IGVEA G G+ + KHAA+L+ G GVLHG +YLLQD DGQI + HSISAGLDYPG+GPEH++L + R EY ++TDDEAL+AF + RLEGIIPALE++HALA K P L +VV SGRGDKD+QT + ++ Sbjct: 206 PAMVRDFQSIIGKETRAQLQEKEGRLPDSLVACVGGGSNAMGLFHEFLEEPSVQIIGVEAGGHGVHTDKHAASLNGGVPGVLHGNRTYLLQDADGQITDAHSISAGLDYPGIGPEHAYLHEVKRVEYVSITDDEALDAFHATCRLEGIIPALESSHALAEAIKRAPKLPKDHLMVVCLSGRGDKDMQTVMNHM 398
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_PARL1 (Tryptophan synthase beta chain OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=trpB PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 2.443e-62 Identity = 117/195 (60.00%), Postives = 148/195 (75.90%), Query Frame = -2 Query: 176 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQV 760 P MVRDF +VIG+ET++Q LE+ G PD L+AC+GGGSNAMGLFH F++D V++ GVEAAG GL++G+H A+L G GVLHG +YLLQD+DGQI + HSISAGLDYPG+GPEH++L + GRAEY + TD EAL AF+ S+LEGIIPALE AHALA++ K+ L +V+N GRGDKDV +L V Sbjct: 209 PAMVRDFQSVIGEETKKQMLEREGRLPDSLVACIGGGSNAMGLFHPFLDDPSVKIYGVEAAGHGLETGEHCASLKGGAPGVLHGNRTYLLQDDDGQIKDGHSISAGLDYPGIGPEHAWLHETGRAEYVSATDREALAAFQLCSKLEGIIPALEPAHALAFVTKIASALPKDHLMVMNMCGRGDKDVFAVADHLGV 403
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_HELPY (Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 3.191e-62 Identity = 118/194 (60.82%), Postives = 146/194 (75.26%), Query Frame = -2 Query: 179 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 760 P MV+ F +IG E + Q LEK PD +IACVGGGSNA+G+F F+NDK+V+LIGVE AG GL++ KH ATL+KG VG+LHG +YLLQD++GQI E HSISAGLDYPGVGPEHS+LK+ GRA Y + +D EALEAFK + EGIIPALE++HALAY KL + + +VVN SGRGDKD+ T L+ Sbjct: 196 PTMVKTFQKMIGDEVKSQILEKENRLPDYVIACVGGGSNAIGIFSAFLNDKEVKLIGVEPAGLGLETNKHGATLNKGRVGILHGNKTYLLQDDEGQIAESHSISAGLDYPGVGPEHSYLKESGRAVYESASDAEALEAFKLLCQKEGIIPALESSHALAYALKLAQKCEEESIIVVNLSGRGDKDLSTVYNALK 389
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 5.443e-62 Identity = 115/186 (61.83%), Postives = 148/186 (79.57%), Query Frame = -2 Query: 203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760 P +VRD+ +VIG E R+Q +EK G P+ ++ACVGGGSNAMGLF+ FV+D V++ GVEAAG GL++ HAAT+SKGE+G+LHGA+ +LQDE+GQI+E SISAGLDYPG+GPEHSF +D GRAEY++VTDDEA+EAF+ R EGIIPALE++HA++Y KL + +VV SGRGDKDV Sbjct: 202 PEIVRDYQSVIGIEARKQHMEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDV 387
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_LISMO (Tryptophan synthase beta chain OS=Listeria monocytogenes GN=trpB PE=3 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 7.109e-62 Identity = 116/186 (62.37%), Postives = 147/186 (79.03%), Query Frame = -2 Query: 203 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDV 760 P +VRD+ +VIG E R+Q LEK G PD ++ACVGGGSNAMGLF+ FV+D V++ GVEAAG GL++ HAAT+SKGE+G+LHGA+ +LQDE+GQI+E SISAGLDYPG+GPEHSF +D GRA Y++VTDDEA+EAF+ R EGIIPALE++HA++Y KL + +VV SGRGDKDV Sbjct: 202 PEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDASVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEAFQLLCRTEGIIPALESSHAISYAVKLASKMRPEESMVVCLSGRGDKDV 387
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BRUSU (Tryptophan synthase beta chain OS=Brucella suis GN=trpB PE=3 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 7.109e-62 Identity = 114/193 (59.07%), Postives = 147/193 (76.17%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P +VRDF +VIG E R+Q LE+ G PDV++A VGGGSNA+GLFH F++D V+++GVEA G GL+ +H A++S G GVLHG +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L Sbjct: 210 PELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402
BLAST of CF836273 vs. ExPASy Swiss-Prot
Match: TRPB_BRUME (Tryptophan synthase beta chain OS=Brucella melitensis GN=trpB PE=3 SV=2) HSP 1 Score: 237.269 bits (604), Expect = 7.109e-62 Identity = 114/193 (59.07%), Postives = 147/193 (76.17%), Query Frame = -2 Query: 182 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 760 P +VRDF +VIG E R+Q LE+ G PDV++A VGGGSNA+GLFH F++D V+++GVEA G GL+ +H A++S G GVLHG +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y + D+EAL+AF+ +R EGIIPALE+AHA+A K+ PT+ ++VN SGRGDKDV T K L Sbjct: 210 PELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDAFQLCTRTEGIIPALESAHAIAQAVKMAPTMGKDKVMIVNLSGRGDKDVHTVGKLL 402 The following BLAST results are available for this feature:
BLAST of CF836273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 449
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836273 ID=CF836273; Name=CF836273; organism=Citrus sinensis; type=EST; length=761bpback to top |