CF836274
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26 Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 2 Query: 206 KESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 K+SD +P RP+ VPETL+ AL ELE A + D F EL+ +L+ YVGR TPLY A RLTEHYR+ GP I+LKREDLNHTGAHKINNA+GQA Sbjct: 10 KDSDLSPLTRPNTLGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26 Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 2 Query: 206 KESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 K+SD +P RP+ VPETL+ AL ELE A + D F EL+ +L+ YVGR TPLY A RLTEHYR+ GP I+LKREDLNHTGAHKINNA+GQA Sbjct: 10 KDSDLSPLTRPNALGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.558e-25 Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 2 Query: 212 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 SD A RP VPETLM AL+ELE A + D F EL+ +L+ YVGR TPLY AERLTEHYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 12 SDLAVSSRPAAAGRFGRYGGQYVPETLMPALAELEQAAAQAWKDPAFTAELNRLLKSYVGRATPLYEAERLTEHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 117
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.471e-25 Identity = 61/99 (61.62%), Postives = 67/99 (67.68%), Query Frame = 2 Query: 233 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 RPD VPETLM ALSELE+A D DFQ EL +LRDYVGR +PLYFAERL+ HY + P IYLKREDLNHTGAHKINNA+GQ Sbjct: 14 RPDARGRFGRFGGKYVPETLMPALSELEAAFAHYRQDPDFQAELQQLLRDYVGRPSPLYFAERLSAHYAH-DQVQPQIYLKREDLNHTGAHKINNALGQ 111
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.471e-25 Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 224 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 P RP VPETLM AL+ELE A + +D F +EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 18 PAVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTDELNRLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.471e-25 Identity = 64/109 (58.72%), Postives = 74/109 (67.89%), Query Frame = 2 Query: 215 DPAPWQ---RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 DPA Q RP VPETLM AL+ELE A + +D F EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 12 DPASLQPSVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTAELNQLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.534e-25 Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 2 Query: 224 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 P RPD VPETLM AL+ELE A D DF+ E +LRD+VGR +PLYFA+RLTE+Y GGP IYLKREDLNHTGAHKINNA+GQ Sbjct: 18 PQVRPDPQGRFGPFGGRFVPETLMSALTELEEAFEHHWRDPDFRAEFHNLLRDFVGRPSPLYFAQRLTEYY-----GGPQIYLKREDLNHTGAHKINNALGQ 114
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 7.733e-25 Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 2 Query: 215 DPA---PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 DPA P RP+ VPETLM AL+ELE A + D F EL+ +L+ YVGR TPLY AERL+ HYRR + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 12 DPASLMPSVRPEAHGRYGRYGGQYVPETLMPALAELEQAAAEAWKDSAFTTELNRLLKSYVGRATPLYEAERLSAHYRR-SDGGPRIWLKREDLNHTGAHKINNALGQA 119
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.250e-24 Identity = 63/109 (57.80%), Postives = 70/109 (64.22%), Query Frame = 2 Query: 206 KESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532 K++D A RP VPETLM AL+ELE A D F EL +LR YVGR TPLY AERLT HY R + GGP I+LKREDLNHTGAHKINNA+GQA Sbjct: 30 KDADLAVSARPSAQGRFGRYGGQYVPETLMPALAELEQAAALAWKDPAFTAELDRLLRSYVGRATPLYEAERLTAHYCR-SDGGPRIWLKREDLNHTGAHKINNALGQA 137
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 6.547e-24 Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 2 Query: 227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529 +Q+PD VPETLM A+ EL+ A + +D FQ EL +L++YVGRETPLY A+RLT+H GG IYLKREDLNHTGAHKINNA+GQ Sbjct: 3 YQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHI-----GGAQIYLKREDLNHTGAHKINNALGQ 98 The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bpback to top |