CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7326 contig Csv1_Contig7326:10..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMT (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL2A) GN=trpB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  206 KESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            K+SD +P  RP+            VPETL+ AL ELE A  +   D  F  EL+ +L+ YVGR TPLY A RLTEHYR+    GP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   10 KDSDLSPLTRPNTLGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROM1 (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain NATL1A) GN=trpB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.356e-26
Identity = 61/109 (55.96%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  206 KESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            K+SD +P  RP+            VPETL+ AL ELE A  +   D  F  EL+ +L+ YVGR TPLY A RLTEHYR+    GP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   10 KDSDLSPLTRPNALGRFGKYGGQYVPETLIPALIELEQAAKEAWKDSSFNSELNHLLKTYVGRSTPLYEATRLTEHYRKNTLKGPRIWLKREDLNHTGAHKINNALGQA 118          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPW (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH7803) GN=trpB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.558e-25
Identity = 64/107 (59.81%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  212 SDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            SD A   RP             VPETLM AL+ELE A  +   D  F  EL+ +L+ YVGR TPLY AERLTEHYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   12 SDLAVSSRPAAAGRFGRYGGQYVPETLMPALAELEQAAAQAWKDPAFTAELNRLLKSYVGRATPLYEAERLTEHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 117          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.471e-25
Identity = 61/99 (61.62%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  233 RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            RPD            VPETLM ALSELE+A      D DFQ EL  +LRDYVGR +PLYFAERL+ HY   +   P IYLKREDLNHTGAHKINNA+GQ
Sbjct:   14 RPDARGRFGRFGGKYVPETLMPALSELEAAFAHYRQDPDFQAELQQLLRDYVGRPSPLYFAERLSAHYAH-DQVQPQIYLKREDLNHTGAHKINNALGQ 111          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNSC (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9605) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.471e-25
Identity = 61/103 (59.22%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  224 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            P  RP             VPETLM AL+ELE A  +  +D  F +EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   18 PAVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTDELNRLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNPX (Tryptophan synthase beta chain OS=Synechococcus sp. (strain WH8102) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.471e-25
Identity = 64/109 (58.72%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  215 DPAPWQ---RPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            DPA  Q   RP             VPETLM AL+ELE A  +  +D  F  EL+ +L++YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   12 DPASLQPSVRPGAHGRFGRFGGQYVPETLMPALAELEQAAAQAWNDPAFTAELNQLLKNYVGRATPLYEAERLTAHYRRAD-GGPRIWLKREDLNHTGAHKINNALGQA 119          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNJB (Tryptophan synthase beta chain OS=Synechococcus sp. GN=trpB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.534e-25
Identity = 60/102 (58.82%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  224 PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            P  RPD            VPETLM AL+ELE A      D DF+ E   +LRD+VGR +PLYFA+RLTE+Y     GGP IYLKREDLNHTGAHKINNA+GQ
Sbjct:   18 PQVRPDPQGRFGPFGGRFVPETLMSALTELEEAFEHHWRDPDFRAEFHNLLRDFVGRPSPLYFAQRLTEYY-----GGPQIYLKREDLNHTGAHKINNALGQ 114          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS3 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9311) GN=trpB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.733e-25
Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  215 DPA---PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            DPA   P  RP+            VPETLM AL+ELE A  +   D  F  EL+ +L+ YVGR TPLY AERL+ HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   12 DPASLMPSVRPEAHGRYGRYGGQYVPETLMPALAELEQAAAEAWKDSAFTTELNRLLKSYVGRATPLYEAERLSAHYRR-SDGGPRIWLKREDLNHTGAHKINNALGQA 119          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_PROMM (Tryptophan synthase beta chain OS=Prochlorococcus marinus (strain MIT 9313) GN=trpB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.250e-24
Identity = 63/109 (57.80%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  206 KESDPAPWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            K++D A   RP             VPETLM AL+ELE A      D  F  EL  +LR YVGR TPLY AERLT HY R + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   30 KDADLAVSARPSAQGRFGRYGGQYVPETLMPALAELEQAAALAWKDPAFTAELDRLLRSYVGRATPLYEAERLTAHYCR-SDGGPRIWLKREDLNHTGAHKINNALGQA 137          
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRTD (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=trpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.547e-24
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 2
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q+PD            VPETLM A+ EL+ A  +  +D  FQ EL  +L++YVGRETPLY A+RLT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHI-----GGAQIYLKREDLNHTGAHKINNALGQ 98          
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_PROMT5.356e-2655.96Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_PROM15.356e-2655.96Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_SYNPW1.558e-2559.81Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_THEEB3.471e-2561.62Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_SYNSC3.471e-2559.22Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNPX3.471e-2558.72Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNJB4.534e-2558.82Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_SYNS37.733e-2557.80Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_PROMM2.250e-2457.80Tryptophan synthase beta chain OS=Prochlorococcus ... [more]
TRPB_STRTD6.547e-2455.45Tryptophan synthase beta chain OS=Streptococcus th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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