CF836274

Overview
NameCF836274
Unique NameCF836274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRT2 (Tryptophan synthase beta chain OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=trpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.547e-24
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q+PD            VPETLM A+ EL+ A  +  +D  FQ EL  +L++YVGRETPLY A+RLT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQQPDAKGFYGKFGGQFVPETLMTAVIELDKAYREAKEDSSFQAELDDLLKNYVGRETPLYHAKRLTDHI-----GGAQIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_SYNS9 (Tryptophan synthase beta chain OS=Synechococcus sp. (strain CC9902) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23
Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 2 
Query:  209 ESDPA---PWQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 532
            + DP+   P  RP             VPETLM AL+ELE +  +   D  F   L+ +L+ YVGR TPLY AERLT HYRR + GGP I+LKREDLNHTGAHKINNA+GQA
Sbjct:   10 QPDPSSLQPSARPGAHGRFGRFGGQYVPETLMPALAELEQSAAQAWADPAFTGRLNHLLKTYVGRATPLYEAERLTAHYRR-DDGGPRIWLKREDLNHTGAHKINNALGQA 119
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRZT (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRZP (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain P1031) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRZJ (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain JJA) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRR6 (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRPS (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain CGSP14) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRPN (Tryptophan synthase beta chain OS=Streptococcus pneumoniae GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRPJ (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
[Close]
BLAST of CF836274 vs. ExPASy Swiss-Prot
Match: TRPB_STRPI (Tryptophan synthase beta chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=trpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  227 WQRPDVXXXXXXXXXXXVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 529
            +Q P+            VPETLM A+ ELE A  +   D  FQEEL+ +LR YVGRETPLY+A+ LT+H      GG  IYLKREDLNHTGAHKINNA+GQ
Sbjct:    3 YQEPNKDGFYGKFGGRFVPETLMTAVLELEKAYRESQADPSFQEELNQLLRQYVGRETPLYYAKNLTQHI-----GGAKIYLKREDLNHTGAHKINNALGQ 98
The following BLAST results are available for this feature:
BLAST of CF836274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
TRPB_STRT26.547e-2455.45Tryptophan synthase beta chain OS=Streptococcus th... [more]
TRPB_SYNS91.905e-2354.95Tryptophan synthase beta chain OS=Synechococcus sp... [more]
TRPB_STRZT2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRZP2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRZJ2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRR62.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPS2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPN2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPJ2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]
TRPB_STRPI2.488e-2356.44Tryptophan synthase beta chain OS=Streptococcus pn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02L07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836274 ID=CF836274; Name=CF836274; organism=Citrus sinensis; type=EST; length=532bp
TCCATATCCCTCCTTTAAAAAACCTCTAATGGCCGTCGCCACAGGTTCAA
GCTTCTGTTGCAAACTCGCAAAGCCCTGCGCTTTCACGACATCGAATTCC
TCGCAGTCGCCCTTCAAGTTGAAGAAATTTACAGCCAGCCCAGCCAAATC
GACGTCCATTCGCTGTACCATTGCGAGAGACCCGGTCGTTCCCATGGAGG
CCAAGAAGGAGTCCGACCCTGCCCCGTGGCAGAGACCTGATGTGTTTGGC
CGGTTCGGTAGGTTCGGCGGGAAGTTCGTCCCTGAGACGCTAATGTACGC
GCTTTCTGAGCTGGAATCCGCACTTCATAAACTCGCCGACGACCGAGATT
TTCAGGAGGAACTTTCGGGGATTTTGAGAGACTATGTCGGCAGGGAGACT
CCGCTTTATTTTGCTGAGCGGCTTACGGAGCACTACAGGCGGCCTAACGG
GGGAGGGCCTCACATATACCTCAAGAGGGAGGACCTCAACCACACTGGGG
CCCACAAGATCAACAATGCTGTTGGCCAAGCT
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